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Report for CCDS20790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20790.1 Public Mus musculus 7 Vmn1r66 23 108 98 CCDS HistoryNCBI Gene:171264Re-query CCDS DB by CCDS ID:20790.1Re-query CCDS DB by GeneID:171264See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20790.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060374.4 ENSMUSP00000055861.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060374.4Link to Ensembl Protein Viewer:ENSMUSP00000055861.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060374Re-query CCDS DB by Protein ID:ENSMUSP00000055861
Original member Current member EBI ENSMUST00000228086.1 ENSMUSP00000153825.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228086.1Link to Ensembl Protein Viewer:ENSMUSP00000153825.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228086Re-query CCDS DB by Protein ID:ENSMUSP00000153825
Original member Current member EBI ENSMUST00000228622.1 ENSMUSP00000153860.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228622.1Link to Ensembl Protein Viewer:ENSMUSP00000153860.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228622Re-query CCDS DB by Protein ID:ENSMUSP00000153860
Original member Current member EBI ENSMUST00000227719.1 ENSMUSP00000154063.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227719.1Link to Ensembl Protein Viewer:ENSMUSP00000154063.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227719Re-query CCDS DB by Protein ID:ENSMUSP00000154063
Original member Current member NCBI NM_134230.3 NP_598991.2 Accepted alive Link to Nucleotide Sequence:NM_134230.3Link to Protein Sequence:NP_598991.2Re-query CCDS DB by Nucleotide ID:NM_134230Re-query CCDS DB by Protein ID:NP_598991Link to BLAST:NP_598991.2

Chromosomal Locations for CCDS 20790.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 10274172 10275104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGCCCAATCATAAAATAGACTTAGGGAATCTATCAATCAAAATCATTTTCTTATTACAAACTACAGTTG
GAATTTTGGGAAATTTCTATCTTCTTATACTACATCTAGTCTACTATGCAGAATACACTTTAAAGCACAC
AGCTTTGATTCTCATGCACCTCTGGGGAGCCAATGCCTTGATAGTTCTTTCTACAGGAGTGCCCTACACA
ATGGCAGCTTTTGGGTTGAAGCAGTTTTTAAATGACTTTGGCTGCAGATTAAGTTTGTACATTCAAAGAC
TTGGTCGGAGTGTGTCCATTGGCACCACCTGTTTTTTGAGTGTCTTCCAAGCCATCACCATCAGTCACAG
AGAATCTTGTTGTAAAGATCAAAAAGCCAAAGTTGCAAAGTATATTGGCTTCTCCATTTTCCTTCTCTGG
GTTTTGTCCATCTTTATACATTTCATTTTCTTTCTGGAAATATTTCTCAAAAGGAATAGCAAAAACATGA
CAAGGAAGCTAGATTTTGAGTACTGCTCCTATGTTAACCATTTTGAAATTAATCACTCAGTTTATGCAGC
ATTAGTGATGTGCCCTGAAATCTTCTTTTCTGTGGTCATTGCCTGGTCCAGTGGCTCTATGACTGTCATT
CTATACAGACATAAGAAGAGAGTTCAACACATCCACAGCTCTCAGGTTTCCAGAAGAAACTCCCCCGAAT
CCAGAGCCATCCAGACAATCCTGTCCCTAGTGTTTTTCTTTCTGGCTTTTTACACTCTCTCCTCCATCTT
ACGAGGTTACATTGCTCTCGTGCATAATCCAAGTTGGTGTCTGGTGATGGTCAATCGCCTCACTTCTCTC
TGTTTTCCATCTTTTGGACCTTTTGTTCTTATAAATAATTACTCTGTTAGGCCAAGACTAAGTTTGGTCT
GGATGAGAAATATCAACCCTTAA

Translation (310 aa):
MPNHKIDLGNLSIKIIFLLQTTVGILGNFYLLILHLVYYAEYTLKHTALILMHLWGANALIVLSTGVPYT
MAAFGLKQFLNDFGCRLSLYIQRLGRSVSIGTTCFLSVFQAITISHRESCCKDQKAKVAKYIGFSIFLLW
VLSIFIHFIFFLEIFLKRNSKNMTRKLDFEYCSYVNHFEINHSVYAALVMCPEIFFSVVIAWSSGSMTVI
LYRHKKRVQHIHSSQVSRRNSPESRAIQTILSLVFFFLAFYTLSSILRGYIALVHNPSWCLVMVNRLTSL
CFPSFGPFVLINNYSVRPRLSLVWMRNINP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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