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Report for CCDS49408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49408.1 Public Mus musculus 14 Fam149b 23 108 98 CCDS HistoryNCBI Gene:105428Re-query CCDS DB by CCDS ID:49408.1Re-query CCDS DB by GeneID:105428See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49408.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224721.1 ENSMUSP00000153509.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224721.1Link to Ensembl Protein Viewer:ENSMUSP00000153509.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224721Re-query CCDS DB by Protein ID:ENSMUSP00000153509
Original member NCBI NM_001177633.1 NP_001171104.1 Updated not alive Link to Nucleotide Sequence:NM_001177633.1Link to Protein Sequence:NP_001171104.1Re-query CCDS DB by Nucleotide ID:NM_001177633Re-query CCDS DB by Protein ID:NP_001171104
Current member NCBI NM_001177633.2 NP_001171104.1 Accepted alive Link to Nucleotide Sequence:NM_001177633.2Link to Protein Sequence:NP_001171104.1Re-query CCDS DB by Nucleotide ID:NM_001177633Re-query CCDS DB by Protein ID:NP_001171104Link to BLAST:NP_001171104.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171104.1 338 Q6NSV7-5 338 100% 0 0

Chromosomal Locations for CCDS 49408.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20348348 20348394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20351312 20351416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20352704 20352839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20356355 20356497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20358024 20358140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20359755 20359916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20363263 20363450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20367846 20367964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGATCTCCAGATACACTCGGAAGGCCGTGCCGCAGAGCGTGGAGCTGAAAGGACTAACAAAGCACGCTC
TTAACCACCACCCCCTTCCAGAGCGACTGGATGACATTTCCTCTACCAACAACAGCCATGGAAAAGATAC
AAGTTCTCACAGTGAATCTGACATCACCCAAGAATCACCCATTACATCAACTGACACTGGGAATTCGAAT
TCGCGTTCTGCTTTTCCAAGCTACGCAGGCACAGGGGTCTCAACAGAAGGCAGCTCCGACTTCTCTTGGG
GATATGGTGAACTTGACCAGAATGCCACTGAGAAAGTGCAGGCCATGTTTACAGCCATCGACGAGCTCCT
GTATGAGCAGCAGCTGAGCGCACACACACAGGGCCTGCAGAAAGAGTGCCAGCAGTGGGCGGCCAGCTTC
CCTCACCTCAGGATTCTGGGTAGGCAGATAATTACTCCGAGTGAAGGCTATGGATTGTACCCTCGATCCC
CTTCTGCTGTGTCAGCTTCACATGAAGCAACCTTGTCTCAAGAAAGAGAGTCTACCATATTTGGTATAAG
GGGAAAGAAGTTACATTTTTCATCTTCTTATAAACCATCCCCCACCATCAAAGCCTCCGGCTTGTGTGCA
GTTGGAGGAGAGGAGGCAGACTGTATAATCTTTTCTGAAGGGGTAATCGAGGAGTACCTAGCTTTTGACC
ACACGGATATGGAAGAGGGATTTCATGGAAACAAATCAGAAGCAGCTACAGAGAAACAGAAGTTAGGGTA
CCCTCCCATTGCGCCATTTCACTGCATGAAAGAGGATGTTCTTGCTCATGTGTTTGACAACGTGTGGAGC
AAGGCTGTGGGCTGTATGGAGCAGTTGACGCGTAGTCACTGGGAGGGATGTGCTTCTGAGAAGAGGCCGA
ATGAGAACACAGCAAGCAGGTGGCCATCTGCAAGCCAGAAAGAAGCCATAAGAGAGCCCAGCCCTGATGG
CAGCTTGATCTTGGACCCCAGAACTGTGAGAAAATAA

Translation (338 aa):
MISRYTRKAVPQSVELKGLTKHALNHHPLPERLDDISSTNNSHGKDTSSHSESDITQESPITSTDTGNSN
SRSAFPSYAGTGVSTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQQLSAHTQGLQKECQQWAASF
PHLRILGRQIITPSEGYGLYPRSPSAVSASHEATLSQERESTIFGIRGKKLHFSSSYKPSPTIKASGLCA
VGGEEADCIIFSEGVIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFHCMKEDVLAHVFDNVWS
KAVGCMEQLTRSHWEGCASEKRPNENTASRWPSASQKEAIREPSPDGSLILDPRTVRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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