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Report for CCDS26177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26177.1 Public Mus musculus 12 Exoc3l4 23 108 98 CCDS HistoryNCBI Gene:74190Re-query CCDS DB by CCDS ID:26177.1Re-query CCDS DB by GeneID:74190See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072646.7 ENSMUSP00000072438.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072646.7Link to Ensembl Protein Viewer:ENSMUSP00000072438.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072646Re-query CCDS DB by Protein ID:ENSMUSP00000072438
Original member Current member EBI ENSMUST00000223050.1 ENSMUSP00000152337.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223050.1Link to Ensembl Protein Viewer:ENSMUSP00000152337.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223050Re-query CCDS DB by Protein ID:ENSMUSP00000152337
Original member Current member EBI ENSMUST00000222897.1 ENSMUSP00000152844.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222897.1Link to Ensembl Protein Viewer:ENSMUSP00000152844.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222897Re-query CCDS DB by Protein ID:ENSMUSP00000152844
Original member Current member NCBI NM_001289487.1 NP_001276416.1 Accepted alive Link to Nucleotide Sequence:NM_001289487.1Link to Protein Sequence:NP_001276416.1Re-query CCDS DB by Nucleotide ID:NM_001289487Re-query CCDS DB by Protein ID:NP_001276416Link to BLAST:NP_001276416.1
Original member Current member NCBI NM_001289488.1 NP_001276417.1 Accepted alive Link to Nucleotide Sequence:NM_001289488.1Link to Protein Sequence:NP_001276417.1Re-query CCDS DB by Nucleotide ID:NM_001289488Re-query CCDS DB by Protein ID:NP_001276417Link to BLAST:NP_001276417.1
Original member Current member NCBI NM_001289489.1 NP_001276418.1 Accepted alive Link to Nucleotide Sequence:NM_001289489.1Link to Protein Sequence:NP_001276418.1Re-query CCDS DB by Nucleotide ID:NM_001289489Re-query CCDS DB by Protein ID:NP_001276418Link to BLAST:NP_001276418.1
Original member Current member NCBI NM_028807.4 NP_083083.3 Accepted alive Link to Nucleotide Sequence:NM_028807.4Link to Protein Sequence:NP_083083.3Re-query CCDS DB by Nucleotide ID:NM_028807Re-query CCDS DB by Protein ID:NP_083083Link to BLAST:NP_083083.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276416.1 721 Q6DIA2 721 99.8613% 0 1
NP_001276417.1 721 Q6DIA2 721 99.8613% 0 1
NP_001276418.1 721 Q6DIA2 721 99.8613% 0 1
NP_083083.3 721 Q6DIA2 721 99.8613% 0 1

Chromosomal Locations for CCDS 26177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111422079 111422478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111423393 111424047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111425163 111425274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111425494 111425616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111425899 111425999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111426132 111426212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111427920 111428034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111428458 111428577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111428657 111428809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111429415 111429536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111430669 111430852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2166 nt):
ATGCCTTTGCCTCAGACAGGGGCCCCTGGGCCAGAGGTAAAAAGCCCCAGGGAGCCTAGGAAGTCACAGA
CCCTCCCTGTGACCACCTGGAAGTCCAACAGTATGAAAGAGCAGAGCGTGCACCACGGGGGCAGCTTGAG
ACCCAGCCTGGGCATGCTGAAGCAGACCCTCTTCCGGACCAGCCTGAGAACTTCAACCCACAAGCCCAAG
GAGGACCCAGGCCTGTTCAGGCGCAGCTCCCGTTTCCTGTTCAGGTCCTTGAGACGGGCCATAGATGAAG
GCTTAACTGCTGGGCATCCCCAAGGCCCTGCGGTACCAGAGAAGCCCTCCAAAGTCACAGATGGCGTCAG
CAGGCAGGCAGCCACTGGGACAGAGGCTGAGGATCTGGAACCCCAGGCAGAAAGTAAATCCGTGGCAGAC
CTCATCACTGAGCGGCAGCTAGTGAAGGCCTTTGAACAATTGCGGTACCTGGAGACGCAGCTGGTAGCCG
ACAAAACTTCCCGCACCTTTACACAGGACCCCACCGCCTATGCTCGGCGCGCTATGGACCTTTGTCTACA
TTACGACGGAATGGCTGCGGAGATCGGAGCCATTGTGCGCGAGGCGCTGAGTTCCGAAGGCGTGGATCGA
GACGCTCTAGCGGAACTGGCCCAAGTGGTACACTTGGAAGAGGAGGCCCATCAGACCTCCCAGGCCGAGG
GTGATTTCTTGAGTACACCCCGCCACTGGCGTATGCATTGGGAGGACGCGGTGCGTCTCAGCGCTCAGGA
GCGCGTACAGCAGGCAGGCGCAAAAGTCATCCCCGGGGCTGCGGAGGGCTCATCCGACCTAGCCCAGCTT
CTGGCTGAGCTCGGCGGTGTGGTTCGCCACGACCTGCAGAAGGTGCGCTTAGAGATGCAGCCCGCTTACG
AAGCCACCGACTTCCCAGTGTGGGAGACCTACTTGCGTGCCTTCCACAGCGCTGTGGCCCAGCGTCTACA
GGAGCTGGCGCGAGACGCCCGCGGCTGTGAGCAGCTCTATGTGCTGTTAGACTGGGCCGCTAATGTCTAT
GGCAGTCCTGACTTCCTGGGCGCCCCAGACTTGGCGCTGCCCACCGAGCCGCTGCCCCCACTTCTAGAGC
CTGCTCTGTGGGCTCGACTGGAAAGTGACTACACTAGCTTCCTAGAGACCAAGATCACAAGCTGTTTTGA
CAGCATCTTGCAGCTGGAACAGAATCGCTGGGAAGCCGACGAGGACCGGGAAGTACTGCAGGGCCTCTAC
CACGCGCCCCTGTCCATCGATGTGCACATGCTGGTAGCTGAGCATGTGAAGGCAGCTGGCGCTATCTCCG
CGGAGCTGGAGGCCACTACCCTGCAGATCTGCGCGCGTGCGCTCTGTCTCTTTGTGCCCAGGTTTGAAAA
GGCTTTTCTGGCGTCGAAGGCAGTGAGCGAATGGTACCTGGGTGCTTACATTAACGCCTGCGTGGAGCTG
AGAACCAGTCTTCTGGCCAGGTTCCCAGGAACCATAAAGGAACTGGAGAAACCCCTAGTGGCTGCCACCA
ATAGCTTCCAGAAACATTTGCTCCAGATTGTACAGCAAGACATGCAGCCTCTATTTAAGGTGCTATATAC
CAAGAGCTGGCTCACACAGGACACACTTCGTCCCCTCATGGACAAAGTGGTGGACTTTGCACATCATCTT
GAGCATGTGACCCCACCACTGGCACAGGAGACACTGCAGGAGGTGCACCGTTTTGTGGTCCGCGAATACC
TGGGGCAGGTGCTGAGGCCCCACGAGAGGTTCAGTGGCCAGGATCGACTGAAGGGCTCTAATAAGATGAA
CCTGGATGCCCAGGCCATTAGCAACACCTTCCAGGGCTTGGGCTCTGAAGCCAAGTGGCTGGACCAAGCC
ATCCTGTCTGTGGCTGAGATCCTGGGCGAGACATACAAAGACGACATCCGGCGGCACCTGGAAACACTTA
TACGGAGCTACCCGGACATCAGGCGAGACCACATTCTGGCCATTCTGGCACTACGCAGACTCGGCCGCCG
CCGGAACCAGAATCTCTTGCAACACACCCAAGACTTGCTGAGGGCTGCCCACGAGACCAGGCTCCCCTCA
CACCACGTGCTCTTCGAGGAGATCGAAGTGCCCACCTCTGTGGACGTGCTAATCACCTGCATCTAG

Translation (721 aa):
MPLPQTGAPGPEVKSPREPRKSQTLPVTTWKSNSMKEQSVHHGGSLRPSLGMLKQTLFRTSLRTSTHKPK
EDPGLFRRSSRFLFRSLRRAIDEGLTAGHPQGPAVPEKPSKVTDGVSRQAATGTEAEDLEPQAESKSVAD
LITERQLVKAFEQLRYLETQLVADKTSRTFTQDPTAYARRAMDLCLHYDGMAAEIGAIVREALSSEGVDR
DALAELAQVVHLEEEAHQTSQAEGDFLSTPRHWRMHWEDAVRLSAQERVQQAGAKVIPGAAEGSSDLAQL
LAELGGVVRHDLQKVRLEMQPAYEATDFPVWETYLRAFHSAVAQRLQELARDARGCEQLYVLLDWAANVY
GSPDFLGAPDLALPTEPLPPLLEPALWARLESDYTSFLETKITSCFDSILQLEQNRWEADEDREVLQGLY
HAPLSIDVHMLVAEHVKAAGAISAELEATTLQICARALCLFVPRFEKAFLASKAVSEWYLGAYINACVEL
RTSLLARFPGTIKELEKPLVAATNSFQKHLLQIVQQDMQPLFKVLYTKSWLTQDTLRPLMDKVVDFAHHL
EHVTPPLAQETLQEVHRFVVREYLGQVLRPHERFSGQDRLKGSNKMNLDAQAISNTFQGLGSEAKWLDQA
ILSVAEILGETYKDDIRRHLETLIRSYPDIRRDHILAILALRRLGRRRNQNLLQHTQDLLRAAHETRLPS
HHVLFEEIEVPTSVDVLITCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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