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Report for CCDS21421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21421.1 Public Mus musculus 7 Or5ae1 23 108 98 CCDS HistoryNCBI Gene:258411Re-query CCDS DB by CCDS ID:21421.1Re-query CCDS DB by GeneID:258411See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21421.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073468.4 ENSMUSP00000073172.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073468.4Link to Ensembl Protein Viewer:ENSMUSP00000073172.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073468Re-query CCDS DB by Protein ID:ENSMUSP00000073172
Original member Current member EBI ENSMUST00000216184.1 ENSMUSP00000149113.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216184.1Link to Ensembl Protein Viewer:ENSMUSP00000149113.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216184Re-query CCDS DB by Protein ID:ENSMUSP00000149113
Original member Current member EBI ENSMUST00000214501.2 ENSMUSP00000149411.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214501.2Link to Ensembl Protein Viewer:ENSMUSP00000149411.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214501Re-query CCDS DB by Protein ID:ENSMUSP00000149411
Original member Current member EBI ENSMUST00000216367.1 ENSMUSP00000149523.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216367.1Link to Ensembl Protein Viewer:ENSMUSP00000149523.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216367Re-query CCDS DB by Protein ID:ENSMUSP00000149523
Original member Current member NCBI NM_146416.2 NP_666528.2 Accepted alive Link to Nucleotide Sequence:NM_146416.2Link to Protein Sequence:NP_666528.2Re-query CCDS DB by Nucleotide ID:NM_146416Re-query CCDS DB by Protein ID:NP_666528Link to BLAST:NP_666528.2

Chromosomal Locations for CCDS 21421.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 84915781 84916728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGACGTCTACAATCTTACCACAGTGACTCAGTTCATCCTCATAGGGCTCTCTGACCTCCCTGAAGTGC
GCTATCCACTCTTTGTGGCCTTTGTCATCATCTATCAGATCACTTTACTGGGAAATGGGCTCATCCTCTT
GGCCATTGTGACTGAGAAAAAGCTTCAAACTCCCATGTATTACCTGTTGGCAAATCTGTCCTTACTGGAC
ATATTCTGCCCATCAGCTACTGTCCCCAAGATGCTTAAGAATCTCTTGACTGAGGATCACAGCATTTCCT
TTGTTGGGTGTGCTTTACAGCTCTATTTCCTGGTGGCTCTAGCTGGGACTGAAGTCTTCTTGCTGGCTGT
GATGGCTTATGACCGGTATGTGGCCATATGCTTTCCTCTACGTTACTCTCTCATTATGACCAAGGTTCGC
TGTGTGCAGCTGTTGTTTGGGACTTGGGCAGCTGGGTTTCTGAACTCCTTTGTCCACACAATGTCCACCT
TTAGCCTGTCTTTCTGCAATTCTAATAGAGTTAATCAGTACTACTGTGATATTCCACCTGTGGTGGCCCT
GTCATGCTCATCTACCTATATGGCAGAAATGCTTGTTTTAGTGATAGGAGGTATCTGTGGGGTTGGTGCT
TTTCTGATCACTCTGATCTCCTACATATACATTGTCTCCACCATCCTAAAGATCCGGTCAGCTGAAGGAA
AGCGCAAAGCTTTCTCCACATGTGCTTCCCATCTTCTTGTAGTCTTCTTGTTCTATGGCACCACTATATT
TACCTATATTCGCCCAACCTCCAGTCAACACTCTCCTGGTAGAGACAGACTCATCTCTATGTTGTATGGG
GTCATTACTCCCATGTTAAACCCCATTATCTACAGTCTGAGAAACACAGAAGTCAAAGGAGCTCTAAGAA
AAGTTTTACATCTTCGGATATGTTCACAGAGAGAATGA

Translation (315 aa):
MDVYNLTTVTQFILIGLSDLPEVRYPLFVAFVIIYQITLLGNGLILLAIVTEKKLQTPMYYLLANLSLLD
IFCPSATVPKMLKNLLTEDHSISFVGCALQLYFLVALAGTEVFLLAVMAYDRYVAICFPLRYSLIMTKVR
CVQLLFGTWAAGFLNSFVHTMSTFSLSFCNSNRVNQYYCDIPPVVALSCSSTYMAEMLVLVIGGICGVGA
FLITLISYIYIVSTILKIRSAEGKRKAFSTCASHLLVVFLFYGTTIFTYIRPTSSQHSPGRDRLISMLYG
VITPMLNPIIYSLRNTEVKGALRKVLHLRICSQRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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