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Report for CCDS20824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20824.1 Public Mus musculus 7 Chmp2a 23 108 98 CCDS HistoryNCBI Gene:68953Re-query CCDS DB by CCDS ID:20824.1Re-query CCDS DB by GeneID:68953See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20824.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005711.5 ENSMUSP00000005711.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005711.5Link to Ensembl Protein Viewer:ENSMUSP00000005711.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000005711Re-query CCDS DB by Protein ID:ENSMUSP00000005711
Original member Current member EBI ENSMUST00000210587.1 ENSMUSP00000148218.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210587.1Link to Ensembl Protein Viewer:ENSMUSP00000148218.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210587Re-query CCDS DB by Protein ID:ENSMUSP00000148218
Original member Current member NCBI NM_001360730.1 NP_001347659.1 Accepted alive Link to Nucleotide Sequence:NM_001360730.1Link to Protein Sequence:NP_001347659.1Re-query CCDS DB by Nucleotide ID:NM_001360730Re-query CCDS DB by Protein ID:NP_001347659Link to BLAST:NP_001347659.1
Original member Current member NCBI NM_026885.3 NP_081161.1 Accepted alive Link to Nucleotide Sequence:NM_026885.3Link to Protein Sequence:NP_081161.1Re-query CCDS DB by Nucleotide ID:NM_026885Re-query CCDS DB by Protein ID:NP_081161Link to BLAST:NP_081161.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347659.1 222 Q9DB34 222 100% 0 0
NP_081161.1 222 Q9DB34 222 100% 0 0

Chromosomal Locations for CCDS 20824.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 13032075 13032202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13032289 13032350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13032435 13032565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13032642 13032821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13033829 13033996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGGACCTGTTGTTTGGGCGCCGGAAGACGCCAGAGGAACTACTTCGGCAAAACCAGAGGGCCCTGAACC
GAGCCATGAGAGAACTGGACAGGGAACGACAGAAACTAGAAACCCAGGAAAAGAAAATCATTGCGGACAT
CAAAAAGATGGCAAAGCAAGGCCAGATGGATGCTGTTCGAATCATGGCAAAAGACCTGGTGCGTACCCGG
AGATATGTACGCAAGTTTGTGTTGATGCGGGCCAACATCCAAGCTGTGTCCCTCAAGATACAGACTCTAA
AATCCAACAACTCAATGGCACAAGCCATGAAGGGTGTTACTAAGGCCATGGGCACTATGAACAGACAGCT
GAAATTACCCCAGATCCAGAAGATCATGATGGAGTTTGAACGGCAGGCAGAGATCATGGACATGAAGGAA
GAAATGATGAATGACGCAATTGATGATGCCATGGGTGATGAGGAAGATGAAGAGGAGAGTGATGCTGTTG
TGTCCCAGGTCCTGGATGAGCTGGGACTGAGCCTCACAGATGAGCTGTCAAACCTTCCCTCCACTGGAGG
CTCACTCAGTGTGGCAGCTGGTGGGAAGAAAGCAGAGGCCACAGCCTCAGCCCTGGCTGATGCTGATGCA
GACCTGGAAGAGAGGCTCAAGAACCTTCGCAGGGACTGA

Translation (222 aa):
MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTR
RYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKE
EMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAEATASALADADA
DLEERLKNLRRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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