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Report for CCDS17274.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17274.1 Public Mus musculus 3 Fndc3b 23 108 98 CCDS HistoryNCBI Gene:72007Re-query CCDS DB by CCDS ID:17274.1Re-query CCDS DB by GeneID:72007See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17274.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046157.9 ENSMUSP00000041495.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046157.9Link to Ensembl Protein Viewer:ENSMUSP00000041495.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000046157Re-query CCDS DB by Protein ID:ENSMUSP00000041495
Original member Current member EBI ENSMUST00000195008.5 ENSMUSP00000141620.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195008.5Link to Ensembl Protein Viewer:ENSMUSP00000141620.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195008Re-query CCDS DB by Protein ID:ENSMUSP00000141620
Original member Current member NCBI NM_001356953.1 NP_001343882.1 Accepted alive Link to Nucleotide Sequence:NM_001356953.1Link to Protein Sequence:NP_001343882.1Re-query CCDS DB by Nucleotide ID:NM_001356953Re-query CCDS DB by Protein ID:NP_001343882Link to BLAST:NP_001343882.1
Original member Current member NCBI NM_173182.3 NP_775274.2 Accepted alive Link to Nucleotide Sequence:NM_173182.3Link to Protein Sequence:NP_775274.2Re-query CCDS DB by Nucleotide ID:NM_173182Re-query CCDS DB by Protein ID:NP_775274Link to BLAST:NP_775274.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343882.1 1207 Q6NWW9 1207 99.8343% 0 2
NP_775274.2 1207 Q6NWW9 1207 99.8343% 0 2

Chromosomal Locations for CCDS 17274.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 27419291 27419602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27426034 27426161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27428864 27429030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27439958 27440170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27451314 27451594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27456449 27456598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27456987 27457100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27458717 27458889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27459945 27460050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27461676 27461794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27463775 27463846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27465702 27465840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27467375 27467461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27468866 27469040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27470222 27470346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27488237 27488290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27491025 27491163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27498777 27498836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27501394 27501545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27508481 27508539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27537949 27538239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27541931 27542174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27556120 27556196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27620605 27620680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27642951 27643061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3624 nt):
ATGTACGTCACCATGATGATGACCGACCAGATCCCCCTGGAATTGCCACCTCTGCTCAATGGGGAGGTGG
CCATGATGCCCCACTTGGTGAACGGAGAAGCAGCTCAGCAGGTCATTCTTGTCCAAGTGAACCCAGGTGA
GACCTTTACCATCAGAGCCGAGGATGGGACACTTCAGTGCATCCAAGGACCTGCTGAAGTTCCCATGATG
TCACCCAATGGGTCCATTCCTCCTATCCATGTGCCTCCAGGTTATATCTCACAGGTGATTGAAGACAGCA
CCGGAGTCCGCCGGGTGGTGGTCACACCGCAGTCTCCTGAGTGCTACCCACCGAGTTATCCCTCAGCCAT
GTCTCCAACCCATCACCTGCCCCCTTATCTGACCCACCATCCACACTTCATCCAGAACTCGCACACCGCC
TACTACCCGCCCGTCACCGTGCCTGGAGATATGCCACCCCAGTTTTTCCCCCAGCCTCACCTTCCTCCCA
CAATATATAGCGAGCCAGAAATTATCCCCCTGTATGGAATGTCGAGCTACGTCACCCGAGAAGACCAGTA
CAGCAAGCCTCCACATAAGAAGCTGAAGGACCGCCAGATCGACCGCCAGAACCGCCTCAACAGCCCACCT
TCCACCATCTACAAGAACAGCTGCGCCACAGTGTACAATGGCTACGGGAAAGGCCACAGTGGAGGGAGCA
GTGGAGGTGGGGGAGGTGGCAGCGGCGGTGGACCTGGGATCAAGAAGACAGAGCGAAGAGCGAGGAGCAG
CCCAAAATCCAGTGATTCTGACCTGCAAGAGTATGAGTTGGAAGTAAAGAGGGTGCAAGACATTCTTTCG
GGAATAGAGAAACCACAGGTGTCTAATATCCAGGCAAGAGCAGTTGTGCTGTCTTGGGCACCCCCTGTCG
GACTGTCCTGTGGACCCCATGGTGGTCTTTCCTTCCCTTACAGCTATGAGGTCGCCTTATCTGACAAAGG
GCGAGATGGGAAATACAAGATCATTTACAGTGGAGAAGAGTTGGAGTGTAACCTGAAAGATCTCAGGCCT
GCCACGGATTACCATGTGAGGGTATATGCCGTGTACAATTCTGTCAAGGGATCCTGCTCCGAGCCAGTCA
GCTTCACCACCCATAGCTGCGCACCAGAATGTCCCTTCCCTCCCAAGCTGGCACACAGGAGCAAAAGTTC
ACTTACCCTGCAGTGGAAGGCTCCAATTGACAATGGTTCAAAAATCACCAGCTACCTTTTAGAATGGGAT
GAGGGAAAGAGAAACAGTGGTTTCAGACAGTGTTTCTTTGGAAGCCAGAAGCACTGCAAACTGACAAAGC
TCTGTCCAGCCATGGGCTACACGTTCAGGCTCGCTGCTCGGAACGACATCGGCACCAGTGGTTACAGCCA
GGAGGTCGTGTGCTACACGTTGGGAAACATCCCGCAGATGCCCTTGGCACCCCGGCTTGTCCGAGCCGGC
GTCACCTGGATCACCCTGCAGTGGAGCAGGCCAGAAGGCTGCTCGCCTGAGGAAGTGATAACCTACACCC
TGGACATTCAGGAGGATGAGAACGATAGCCATTTCCACCCAAAATACACTGGAGAGGACCTAACCTGTAC
TGTGAAAAATCTCAAGCGAAGCACACAGTATAAATTCAGGCTGACTGCTTCCAACATGGAGGGGAAGAGC
TGCCCAAGTGAAGTCCTGGTTTGTACAACCAGCCCCGACAGACCTGGCCCTCCAACCAGACCCCTCATTA
AAGGACCTGTCACATCACATGGCTTCAGTGTCAAGTGGGATGCTCCAAAGGACAACGGTGGCTCAGAAAT
CCTGAAGTATCTGCTGGAGATCACGGATGGAACTTCTGAAGCTGGGCAGTGGGAAGTGGCCTACAGTGGA
TCGGCTACAGAGTATGTCTTTACCCATTTGAAACCAGGCACTTTGTACAAACTGCGAGCGTGCTGCATCA
GTACCGGTGGGCACAGTCAGTGTTCTGAAAGTCTCCCTGTCCGCACACTAAGCCTTGCACCAGGTCAGTG
CCGACCACCGAGGGTTTTGGGTAGACCAAAGCACAAAGGAGTCCACTTAGAGTGGGATGTGCCTGCGTCT
GAAAGTGGCTGTGAGGTCTCAGAATACAGTGTGGAAATGACGGAACCCGAGAATGTCGCCTCAGAGGTGT
ACCATGGGCCTGAGCTGGAGTGCACGGTTGGCAACCTGCTGCCTGGAACTGTGTACCGCTTCAGAGTGCG
AGCTCTGAATGACGGAGGGTACGGTCCCTACTCTGATGTGTCAGAAATCACCACTGCCGCAGGGCCCCCT
GGGCAGTGCAGAGCACCGCGTGTCTCCTTCACGCCTGACGGATGCGTCCTGGTGGGCTGGGAGAGCCCTG
CGAGCCCTGGTGCCGACATCTCCGAATACAGGTTGGAGTGGGGAGAAGATGAACAGTCCTTAGAACTCGT
TTATCATGGTCCAGACACCTGCTTTGAGATGCGAGATCTGTTGCCTGCTGCACAGTATTGCTGCAGACTA
CAGGCCTTCAATCCAGCAGGCGCAGGGCCATATAGTGAGCTTGTCCACTGCCAGACACCAGCCTCTGCCC
CCGACCCTGTCTCCACTCTGTGTGTCCTGGAGGAGGAGCCCCCCAGTGCCCACCCAGACTCACCCTCTGT
GTGCCTTGTACTGAACTGGGAAGAGCCGTGCAATAATGGGTCTGAAATCCTTGCTTATAACATCGATCTG
GGAGACAGCTGCATTACTGTGGGCAACACTACCACACACGTGATGAAGAACCTCCTTCCAGAAACGACAT
ACCGGATCAGAATTCAGGCTATCAATGAAATTGGAGTTGGACCATTTAGTCAGTTCATTAAAGCAAAAAC
TCGGCCATTACCGCCTTCGCCTCCTAGGCTTGAGTGTGCTGCGTCTGGTCCTCAGAGCCTGAAGCTCAAG
TGGGGAGACAGTAACTCCAAGACACATGCTGCTGGTGACATGGTGTACACACTACAGCTGGAAGACAGGA
ACAAGAGGTTTATCTCAATCTACCGAGGACCCAGCCACACCTACAAGGTCCAGAGACTGACAGAGTTTAC
CTGCTACTCCTTCAGGATCCAGGCAATGAGCGAGGCAGGGGAGGGGCCTTACTCAGAAACCTACACCTTC
AGCACAACCAAAAGCGTGCCTCCCACCCTCAAAGCACCTCGAGTGACGCAGTTAGAAGGGAATTCCTGTG
AAATCTTCTGGGAGACGGTACCACCGATGAGAGGCGACCCTGTGAGCTACGTTCTACAGGTGCTGGTTGG
AAGAGACTCTGAGTACAAGCAGGTGTACAAGGGAGAAGAAGCCACATTCCAAATCTCAGGCCTCCAGAGC
AACACAGATTACAGGTTCCGCGTGTGTGCCTGCCGCCGCTGTGTGGACACGTCTCAGGAGCTCAGTGGCG
CGTTCAGCCCCTCTGCGGCTTTCATGTTACAACAGCGTGAGGTTATGCTTACAGGGGACCTGGGAGGCAT
GGAAGAGGCCAAGATGAAGGGCATGATGCCCACCGACGAACAGTTTGCTGCACTCATCGTGCTTGGCTTC
GCGACCCTGTCCATTTTGTTTGCCTTTATATTACAGTACTTCTTAATGAAGTAA

Translation (1207 aa):
MYVTMMMTDQIPLELPPLLNGEVAMMPHLVNGEAAQQVILVQVNPGETFTIRAEDGTLQCIQGPAEVPMM
SPNGSIPPIHVPPGYISQVIEDSTGVRRVVVTPQSPECYPPSYPSAMSPTHHLPPYLTHHPHFIQNSHTA
YYPPVTVPGDMPPQFFPQPHLPPTIYSEPEIIPLYGMSSYVTREDQYSKPPHKKLKDRQIDRQNRLNSPP
STIYKNSCATVYNGYGKGHSGGSSGGGGGGSGGGPGIKKTERRARSSPKSSDSDLQEYELEVKRVQDILS
GIEKPQVSNIQARAVVLSWAPPVGLSCGPHGGLSFPYSYEVALSDKGRDGKYKIIYSGEELECNLKDLRP
ATDYHVRVYAVYNSVKGSCSEPVSFTTHSCAPECPFPPKLAHRSKSSLTLQWKAPIDNGSKITSYLLEWD
EGKRNSGFRQCFFGSQKHCKLTKLCPAMGYTFRLAARNDIGTSGYSQEVVCYTLGNIPQMPLAPRLVRAG
VTWITLQWSRPEGCSPEEVITYTLDIQEDENDSHFHPKYTGEDLTCTVKNLKRSTQYKFRLTASNMEGKS
CPSEVLVCTTSPDRPGPPTRPLIKGPVTSHGFSVKWDAPKDNGGSEILKYLLEITDGTSEAGQWEVAYSG
SATEYVFTHLKPGTLYKLRACCISTGGHSQCSESLPVRTLSLAPGQCRPPRVLGRPKHKGVHLEWDVPAS
ESGCEVSEYSVEMTEPENVASEVYHGPELECTVGNLLPGTVYRFRVRALNDGGYGPYSDVSEITTAAGPP
GQCRAPRVSFTPDGCVLVGWESPASPGADISEYRLEWGEDEQSLELVYHGPDTCFEMRDLLPAAQYCCRL
QAFNPAGAGPYSELVHCQTPASAPDPVSTLCVLEEEPPSAHPDSPSVCLVLNWEEPCNNGSEILAYNIDL
GDSCITVGNTTTHVMKNLLPETTYRIRIQAINEIGVGPFSQFIKAKTRPLPPSPPRLECAASGPQSLKLK
WGDSNSKTHAAGDMVYTLQLEDRNKRFISIYRGPSHTYKVQRLTEFTCYSFRIQAMSEAGEGPYSETYTF
STTKSVPPTLKAPRVTQLEGNSCEIFWETVPPMRGDPVSYVLQVLVGRDSEYKQVYKGEEATFQISGLQS
NTDYRFRVCACRRCVDTSQELSGAFSPSAAFMLQQREVMLTGDLGGMEEAKMKGMMPTDEQFAALIVLGF
ATLSILFAFILQYFLMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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