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Report for CCDS52176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52176.1 Public Mus musculus 7 Zfp568 23 108 98 CCDS HistoryNCBI Gene:243905Re-query CCDS DB by CCDS ID:52176.1Re-query CCDS DB by GeneID:243905See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52176.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000146074.7 ENSMUSP00000118823.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146074.7Link to Ensembl Protein Viewer:ENSMUSP00000118823.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146074Re-query CCDS DB by Protein ID:ENSMUSP00000118823
Original member Current member EBI ENSMUST00000177931.1 ENSMUSP00000137438.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177931.1Link to Ensembl Protein Viewer:ENSMUSP00000137438.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177931Re-query CCDS DB by Protein ID:ENSMUSP00000137438
Original member Current member NCBI NM_001167873.1 NP_001161345.1 Accepted alive Link to Nucleotide Sequence:NM_001167873.1Link to Protein Sequence:NP_001161345.1Re-query CCDS DB by Nucleotide ID:NM_001167873Re-query CCDS DB by Protein ID:NP_001161345Link to BLAST:NP_001161345.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161345.1 670 E9PYI1-2 670 100% 0 0

Chromosomal Locations for CCDS 52176.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29987773 29987806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29989049 29989107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29997750 29997876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29998115 29998210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30013843 30013889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30015066 30015189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30017167 30017262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30022218 30023647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGGAGCGCTTGTCCCAGATGGCAGGAAGAAGAGCTTGGTGTGCCGAGGATTCTGTACCTCGCCAGGAAG
AAGAAGACAGGACCAGGCCTTCAAAAACAGTGACATTCAAGGATGTGGCTGTGGACCTCACACAGGAGGA
ATGGCAGCAAATGAAGCCTGCTCAGAGGGCTTTGTACCGAGATGTGATGCTGGAGACCTACAGCAACCTA
GTAACCGTGGGTTGTCAAGTCACCAAACCAGATGTGATCTTCAAGTTGGAACAAGCAGAGGAGCCATGGG
TACTGGAGGAAGAGATGTTTTGGAGACGCTCTCCAGCCGCAAGAGGAAGAATGAAGAGTTTTGCCTTTAA
GGACATGGCCAAGGATCTGAGGTTCGAGGATGTGGTCATTTACTTCTCTCTGGAGGAGTGGGAGTGCTTG
CGCCATTCCCACAGGAATCTGTACCGAGCTGTGATGTTGGATAACTACAGCAACCTGCTGTCACTGAGTC
TTGCTGATACTAAGCCACGGGTGGTCTCCCTTCTAGAACAGGGCAAAGAGCCCTGGATGGTTATGAGGAA
TGAGACAAAAATTTGGCATCCTGATTGGGTGTCTAGGACAGAAGCCAAGGACAGTTCCAAAATTAAAACA
TTGCAAGAAAAGATGGCAAAAAAACACACATGCCCCACTCTTGAGGACAGCAAGACCAGAGGGGACAGAG
AAGTCACACGTGAGCTGGAGGGTCAACAGGTCCATCAGGAGGGACACTTGAGGCAAGCTGCAGTAACCTC
TGTCGAGAGGCCTGATTCTGTCCAGTGCACAGCCCATAGGGAGGCTCACCCTGGAGGAAAACCCTGCAGC
TCTGAGAAAAGTCAGAAAACGTCCCTGTGCCAGCCACCTCCCATTGAACGTGAGCAACTTCACAGTAAGG
CAAAGGCCAGTGAGCATGCACAGCATGGCAAGGTCTTTAATAGCTGCACGTCAGACACGGCTGTGCATCC
GAGACCCCAGGAAAGCAGAAAAGACAGTGAGAGGAAGAAAAGTGCCCTTGCTGGTGGTCCTGACACCTCG
AAACCTCAGAGCGCTCAGGGGAGTGAGAGGCCACATAAGTGTAAGGAATGCGGGAAGGCCTTCCACACTC
CCTCCCAGCTCAGTCACCATCAAAAGCTGCATGTGGGTGAGAAGCCCTACAAGTGCCAAGAGTGTGGAAA
GGCTTTCCCGTCTAACGCCCAGCTTAGTCTTCACCATAGAGTTCACACTGATGAGAAGTGCTTTGAATGC
AAGGAGTGCGGGAAAGCCTTCATGCGCCCATCACACCTGCTCCGGCACCAGCGCATCCACACTGGGGAGA
AGCCTCACAAGTGTAAGGAGTGCGGGAAGGCCTTCCGCTACGACACACAGCTCAGCCTGCACCTGCTCAC
GCATGCTGGGGCACGGCGCTTTGAGTGTAAGGACTGTGACAAGGTGTATAGCTGTGCCTCCCAGCTCGCT
CTCCACCAGATGTCACACACTGGGGAGAAGCCCCACAAGTGTAAGGAGTGTGGGAAAGGCTTCATCTCTG
ACTCACACCTTCTTCGCCATCAGAGTGTTCACACTGGCGAGACGCCCTATAAGTGTAAGGAGTGTGGCAA
AGGCTTCCGTCGTGGTTCAGAACTTGCCCGGCATCAGAGAGCCCATTCTGGCGATAAACCCTACAAGTGT
AAGGAATGTGGAAAGTCCTTCACTTGCACCACAGAGCTCTTTAGACATCAGAAAGTTCACACTGGTGATA
GACCCCACAAATGTAAGGAGTGTGGGAAGGCCTTCATCCGAAGATCAGAGCTGACACATCATGAAAGAAG
CCACAGCGGTGAGAAACCCTATGAGTGCAAAGAGTGTGGAAAGACCTTCGGCCGAGGCTCAGAGCTCAGT
CGACACCAGAAAATCCACACCGGTGAGAAGCCCTATAAGTGCCAGCAATGTGGGAAGGCCTTTATTCGTG
GCTCTCACCTTACCCAACATCAGAGGATTCATACAGGACGGAGGAGTGAATGA

Translation (670 aa):
MERLSQMAGRRAWCAEDSVPRQEEEDRTRPSKTVTFKDVAVDLTQEEWQQMKPAQRALYRDVMLETYSNL
VTVGCQVTKPDVIFKLEQAEEPWVLEEEMFWRRSPAARGRMKSFAFKDMAKDLRFEDVVIYFSLEEWECL
RHSHRNLYRAVMLDNYSNLLSLSLADTKPRVVSLLEQGKEPWMVMRNETKIWHPDWVSRTEAKDSSKIKT
LQEKMAKKHTCPTLEDSKTRGDREVTRELEGQQVHQEGHLRQAAVTSVERPDSVQCTAHREAHPGGKPCS
SEKSQKTSLCQPPPIEREQLHSKAKASEHAQHGKVFNSCTSDTAVHPRPQESRKDSERKKSALAGGPDTS
KPQSAQGSERPHKCKECGKAFHTPSQLSHHQKLHVGEKPYKCQECGKAFPSNAQLSLHHRVHTDEKCFEC
KECGKAFMRPSHLLRHQRIHTGEKPHKCKECGKAFRYDTQLSLHLLTHAGARRFECKDCDKVYSCASQLA
LHQMSHTGEKPHKCKECGKGFISDSHLLRHQSVHTGETPYKCKECGKGFRRGSELARHQRAHSGDKPYKC
KECGKSFTCTTELFRHQKVHTGDRPHKCKECGKAFIRRSELTHHERSHSGEKPYECKECGKTFGRGSELS
RHQKIHTGEKPYKCQQCGKAFIRGSHLTQHQRIHTGRRSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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