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Report for CCDS18016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18016.1 Public Mus musculus 4 Casp8ap2 23 108 98 CCDS HistoryNCBI Gene:26885Re-query CCDS DB by CCDS ID:18016.1Re-query CCDS DB by GeneID:26885See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029950.9 ENSMUSP00000029950.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029950.9Link to Ensembl Protein Viewer:ENSMUSP00000029950.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029950Re-query CCDS DB by Protein ID:ENSMUSP00000029950
Original member Current member EBI ENSMUST00000178925.7 ENSMUSP00000136016.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178925.7Link to Ensembl Protein Viewer:ENSMUSP00000136016.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178925Re-query CCDS DB by Protein ID:ENSMUSP00000136016
Original member Current member NCBI NM_001122978.2 NP_001116450.1 Accepted alive Link to Nucleotide Sequence:NM_001122978.2Link to Protein Sequence:NP_001116450.1Re-query CCDS DB by Nucleotide ID:NM_001122978Re-query CCDS DB by Protein ID:NP_001116450Link to BLAST:NP_001116450.1
Original member Current member NCBI NM_011997.3 NP_036127.2 Accepted alive Link to Nucleotide Sequence:NM_011997.3Link to Protein Sequence:NP_036127.2Re-query CCDS DB by Nucleotide ID:NM_011997Re-query CCDS DB by Protein ID:NP_036127Link to BLAST:NP_036127.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116450.1 1962 Q9WUF3 1962 100% 0 0
NP_036127.2 1962 Q9WUF3 1962 100% 0 0

Chromosomal Locations for CCDS 18016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 32624112 32624166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32630178 32630246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32631066 32631166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32631806 32631880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32634768 32634883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32639364 32641558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32643540 32646660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32648027 32648126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32649173 32649229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5889 nt):
ATGGCAGCAGATGATGACAATGGTGATGGAACGGGTTTGTTTGATGTCTGTCCTGCCTCTCCACTTAAAA
ATAATGATGAAGGCTCATTGGACATATATGCTGGGTTGGACAGTGCTGTTTCTGACAGTACTGCTAGATC
CTGTGTGTCATTCAGAAACTGTTTAGATTTGTATGAAGAGATCCTGACTGAAGAAGGAACTGCGAAGGAG
GCAACGTACAATGACTTGCAGATAGAATATGGGAAATGTCAGCAGCAAATGAAAGACCTGATGAAAAGGT
TTAAGGAAATACAGACACAGAACTTGAACTTAAAAAATGAAAACCAGTCTCTTAAGAAGAATATCTCAGC
ACTTATCAAAACTGCCAGAGTGGAGATAAACCGTAAGGATGAAGAGATAAATCATCTTCACCAAAGATTG
TCTGAGTTTCCACATTTTCGAAATAACCATAAAACTGCAAGAACAAAAGATTCACAGTCCACATCTCCCC
ATTTGGATGATTGTTCAAAGACTGATCACGGAGTTAAAAGTGATGTTCAGAAAGATGTACATCCTAACAC
TGCACAGCCAAACTTGGAAAAGGAAGGAAAATCGCATTCTGAAGCACAGAATCCTTTGCACTTGTCTACG
GGTGTTGAGAAACATTGTGCCAATAATGTCTGGTCACGTTCTCCTTACCAGGTTGGAGAAGGTAACTCAA
ATGAGGATAATAGGAGAGGAAGGAGTGGCACTAGACATAGCCAGTGTAGCAGAGGAACTGATAGAACACA
GAAAGACTTACATAGCAGCTGTAATGACAGTGAGCCAAGGGACAAGGAGGCTAACTCCAGACTACAAGGA
CACCCTGAGAAACATGGCAACAGTGAAGCAAGGACGGAGAGCAAAATTTCAGAGAGTAAAAGCAGCACTG
GTATGGGATATAAAAGTGAGCGCAGTGCCTCTTCTTGGGAAAAAGAGACTTCCAGAGAAAGGCCACACAC
TCGAGTGGAATCTCAACATGACAAAAATCTAGAGAAACAAAATGAAAGATTACAAAATATGCACAGAAAA
GAGCTTCCGTCTCAGGACAAAACAGAAAGAAAAGTTGATGTGAAGTTTAAACCAGCAGGAGAGGAGCAGG
GGCATCGGGGAAGAGTGGACCGGGCGTTACCTCCTCATCCCAAGAATGACGTGAAACATTACGGCTTCAA
TAAGTATCATCCAGAAGAGAGAAGGGGAAGGGAAGATTGTAAAAGAGACAGAGGGATGAACAGTCATGGC
TTTCAAGATAGAAGATGTTCATCTTTTCTTTCAAGCAACAGAAATAGCAAATACCCGCACTCCAAGGAAG
TTAGTGTTGCACACCAGTGGGAAAATACTCCTTTCAAAGCAGAAAGACATAGAACTGAGGACAGGAGGAA
AAGAGAACGAGAAAACAAAGAAGAAAGTAGACATGTGAAAAGTGACAAAAAATCACCTCCAGAACACTTA
CAAAGGACTCATAAAGACACTAAGAAAAGCACTGCTGATGGAAAGAGACAGACTGAGCCCAAACATGGTA
AAGGTGCAGTCTCTAACAGTGAGCTTTCTAAAGGGACAGACAGTAAAGAAGGTGCAACAAAGGTGGAGAG
TGGGCCAAATGAAGCAAAAGGCAAGGACTTAAAGTTAAGCTTCATGGAAAAACTGAACTTAACTCTTTCT
CCTGCTAAAAAGCAGCCTGCTTGTCAAGATAACCCACATCAAATAACTGGTGTTCCCGAGCCCAGTGGCA
CGTGTGACTCACGGTCCTTGGAGACGACTGGAACGGTGGCATGCCTTCCTTCTGGCAGTGAACATAATAG
AGAGGAAACCAAATCAGAGTTACCAGAGCCAAAGGAGGCTCTTTTGGCAACATCTCAACTCAGGATCAGC
ATTCCAGAAAACAAAATGAAGGAAGAAAAGAGGTTGTTATTTAAATCTGTTGAGAATACTGTGCCTTGTG
AACTGCTTGCTTGTGGCACGGAAATTTCCCTCCCAGCACCTGTAGAAATTGAACAAGCAAGATGCTTGCT
TGGATCAGTGGAAGTGGAAGAGACCTGTGGTGGTGCAAGGACAGCCGCTTCTGTGGTGATGCATGTGTTA
CCAGAACATGCTTCTGAAGATGCCAGCCAAGAATTGGACACCAAAAGACACGATGGTATAAATGCTTGTG
CTATTTCTGAAGGTGTGAAAACAAAGGTGATTCTTTCACCAAAAGCAGCTGCAGCCAGTGAGAGCCATCT
TGCACCTTTGGTTGAAGAACCTAGCATTTCACTAGTAAACTGTTCGGGAGACAATAATCCTAAACTTGAA
CCTTCTCTTGAAGAGAGGCCTATAGTTGAGACTAAATCCTGTCCTTTGGAGTCTTGTTTACCTAAAGAGA
CTTTTGTACCTTCACCACAGAAGACTGAGTTGATTGACCACAAAATAGAAACTGGAGAATCAAACTCAGT
ATATCAAGATGATGATAACTCAGTTTTGAGTATTGACTTTAATAATCTGAGACCTATTCCAGACCCCATC
AGCCCTCTGAATAGTCCAGTGAGACCGGTATGCAAAGTTGTTAGCATGGAGAGCTCATGTGCAATTCCAC
TGTATGATAGCAGTCATAAAGATGAGTTTCCATCCAATTCAACTCTTTCTACCTTCAAGAGTCAGTCTGA
TCTAAATAAGGAAAATGAAAAACCAGTTCCCAAATTTGACAAATGTTCAGAAGCAGATTCTTGTAAGCAT
TTGTCTTTAGATGAATTAGAAGAAGGCGAAATTAGAAGTGATGATGAAGAATCTGTAGCACAAAAACGCT
TGGAAAAGAGTGCAAGACCTAGAGTTTCTGCTGAAGTGCAGCCAGGGAAAAGCAGCCCAGGAAGCAGGAG
GAGCACTGTGCATGTGCATAAGGACAACGGGAGGACTGCTGTAAAACTCCCTCGGGACAGACTCACATGG
AGCAAAAGATCAAGTGAATCAAGACCCTCCAACACCGAAAGGAAAAGTAAAACAATGAGCATCTCCAGCT
TGGAAAAAATACTTCCGCTTATCCTTGTACCCTCTTCCCTGTGGGAGGTTATGCATATGTTACGGTTGCT
AGGTAAACATGTAAGAAAAAATTATATGAAATTCAAGATAAAATTTTCATTGACACAATTTCATAGAATT
ATTGAATCTGCAATTTTGAGTTTCACATCACTAGTTAAATGCCTTGATTTGTCTAAGATCTGTAAGTCAG
TAAGTACTTTACAAAAGAGTCTTTGTGAAGTTATAGAATCTAACCTTAAACAAGTGAAGAAGAATGGCAT
AGTTGACCGTTTATTTGAACAGCAACAAACAGATATGAAAAAAAAATTGTGGAAGTTTGTAGATGAACAA
CTTGATTATTTGTTTGAAAAGCTTAAAAAAATCCTACTAAAGTTTTGTGATTCTGTAAACTTTGAAAATG
AGAATAGTGAAGGAAAACTTGGAAAAAAATATAAAGAGAGAACCCAACATTCAAATTGTCAGAAGAAAAA
AATGGACAACAAAGAAATACGGAGAGAAAAAGTGCTAAAATCAGAAAATACTGTGAATTTTAAATCTTCA
CTGGGATGTGAAAAATCTGAAGAAAAACATCAGGACCAAAATAAAACCAATGCTAGTATAGTAAAGCATG
ATGTAAAAAGAACTTTTAGCACTTGCAGTGATAATACAAAGAACGCTGAATGTAAAGAGCAGTTTCTGGA
AAAGAGCTGCCCGAGTACCCCTAGGCCAGGAAAAGATGAAGGACATACTGAGGAGGAGGCACAGGCGGCA
CAGCATGCAAGTGCTAAGTCCGAACGGAGCTTTGAGATCCTTACTGAGCAGCAGGCATCCAGCCTTACTT
TTAACTTAGTGAGTGATGCACAGATGGGTGAGATATTTAAAAGCTTGCTACAAGGTTCTGATCTGTTGGA
CACAAGTGGCACTGAAAAGGCAGAGTGGGAATTAAAGACTCCAGAGAAACAGCTGCTGGAAAGCCTCAAG
TGTGAATCTGCACCAGCTTGTGCAACAGAAGAGCTGGTTTCAGAGGGGGCTTCTCTTTGTCCAAAAGTGA
TCAGTGATGATAATTGGTCTTTATTATCATCTGAAAAGGGTCCATCTTTATCTTCAGGGCTTTCACTGCC
AGTTCATCCTGATGTGTTAGATGAAAATTGTATGTTTGAAGTATCTTCTAACACTGCTTTAGGTAAAGAT
AATGTATACAGCTCAGAAAAGAGTAAGCCCTGCATCTCTTCCATACTCTTAGAAGATCTTGCGGTCTCTT
TAACAGTACCGTCACCTCTGAAATCAGATGGCCATTTGAGTTTCTTAAAGCCAGAAGTTTTGTCAACTTC
AACTCCTGAAGAAGTTATTAGTGCACATTTTAGTGAGGATGCTTTGCTTGAGGAAGAGGATGCATCTGAA
CAGGACATTCATCTAGCTCTGGAGTCTGATAACTCAAGCAGTAAGTCAAGCTGTTCATCATGGACAAGCC
GGTCTGTTGCTTCAGGCTTTCAGTACCACCCTAATCTTCCCATGCATGCTGTCATAATGGAAAAGTCCAA
TGATCATTTCATTGTGAAAATACGGCGTGCAACACCATCTACCTCCCCTGGCCTTAAACATGGTGTGGTA
GCTGAGGAGTCATTGACATCTTTGCCTAGAACTGGAAAAGAAGCTGGTGTAGCAACAGAGAAAGAACCTA
ACCTGTTTCAGAGTACAGTTTTAAAACCTGTCAAGGACTTGGAAAATACTGATAAAAATATTGATAAGAG
TAAACTAACTCATGAAGAACAGAACTCTATAGTACAAACACAGGTTCCAGATATATATGAATTTCTTAAA
GATGCCTCAAATAAGGTGGTTCATTGTGATCAAGTGGTTGATGATTGCTTCAAGTTGCATCAAGTATGGG
AACCAAAAGTTTCTGAGAACCTTCAAGAGTTGCCTTCAATGGAGAAAATCCCACACTCTCTTGATAATCA
TCTTCCTGATACACACATAGATCTAACGAAAGATTCAGCCACTGAGACCAAAAGCTTGGGGGAGCTAATG
GAAGTAACAGTTTTAAATGTTGATCACTTGGAATGTTCTCAAACCAACTTAGATCAAGATGCAGAGATAA
CATGTAGTTCTTTACAGCCTGATACTATAGATGCTTTTATTGATTTGACACATGATGCTTCAAGTGAGAG
TAAAAATGAAGGTAGTGAACCTGTGTTAGCTGTTGAAGGTATGGGATGCCAGGTAATATGTATAGATGAG
GATACCAACAAAGAAGGAAAGATGGGAAGGGCAAACAGTCCTTTAGAAAGTATTGTTGAAGAAACTTGTA
TTGATTTGACCTCAGAGTCTCCTGGCTCCTGTGAAATCAAGAGACATAATTTAAAGTCGGAGCCTCCATC
AAAGTTGGATTGTTTAGAGTTGCCTGAAACTCTGGGTAATGGTCACAAGAAGAGGAAAAACAGTCCTGGT
GTTAGTCACTCTTCTCAGAAAAAACAAAGAAAGGACATAGACTTAAGTAGTGAAAAGACCCAGAGACTTA
GTCCCAATTCTGATAGAAATGGTGATGCTCACAGAAAGCAAGCGAGCAAGAAAAGAGAACCTGCAGTAAA
TGAAACGTCCTTGTCATCAGAGGCCAGCCCAGAGGTGAAGGGTTCAACAGCAGTACTTGCTGCTTCCCCA
GCAAGCCTTTCTGCAAAAAATGTTATCAAAAAGAAGGGAGAAATTATAGTTTCATGGACAAGAAATGATG
ACCGGGAAATTTTACTGGAATGTCAGAAAAGAATGCCGTCCCTGAAAACATTTACTTATTTAGCTGTCAA
GCTGAATAAAAATCCAAATCAGGTTTCAGAGAGGTTCCAGCAGCTGAAAAAGCTCTTTGAGAAGTCAAAA
TGCAGGTAG

Translation (1962 aa):
MAADDDNGDGTGLFDVCPASPLKNNDEGSLDIYAGLDSAVSDSTARSCVSFRNCLDLYEEILTEEGTAKE
ATYNDLQIEYGKCQQQMKDLMKRFKEIQTQNLNLKNENQSLKKNISALIKTARVEINRKDEEINHLHQRL
SEFPHFRNNHKTARTKDSQSTSPHLDDCSKTDHGVKSDVQKDVHPNTAQPNLEKEGKSHSEAQNPLHLST
GVEKHCANNVWSRSPYQVGEGNSNEDNRRGRSGTRHSQCSRGTDRTQKDLHSSCNDSEPRDKEANSRLQG
HPEKHGNSEARTESKISESKSSTGMGYKSERSASSWEKETSRERPHTRVESQHDKNLEKQNERLQNMHRK
ELPSQDKTERKVDVKFKPAGEEQGHRGRVDRALPPHPKNDVKHYGFNKYHPEERRGREDCKRDRGMNSHG
FQDRRCSSFLSSNRNSKYPHSKEVSVAHQWENTPFKAERHRTEDRRKRERENKEESRHVKSDKKSPPEHL
QRTHKDTKKSTADGKRQTEPKHGKGAVSNSELSKGTDSKEGATKVESGPNEAKGKDLKLSFMEKLNLTLS
PAKKQPACQDNPHQITGVPEPSGTCDSRSLETTGTVACLPSGSEHNREETKSELPEPKEALLATSQLRIS
IPENKMKEEKRLLFKSVENTVPCELLACGTEISLPAPVEIEQARCLLGSVEVEETCGGARTAASVVMHVL
PEHASEDASQELDTKRHDGINACAISEGVKTKVILSPKAAAASESHLAPLVEEPSISLVNCSGDNNPKLE
PSLEERPIVETKSCPLESCLPKETFVPSPQKTELIDHKIETGESNSVYQDDDNSVLSIDFNNLRPIPDPI
SPLNSPVRPVCKVVSMESSCAIPLYDSSHKDEFPSNSTLSTFKSQSDLNKENEKPVPKFDKCSEADSCKH
LSLDELEEGEIRSDDEESVAQKRLEKSARPRVSAEVQPGKSSPGSRRSTVHVHKDNGRTAVKLPRDRLTW
SKRSSESRPSNTERKSKTMSISSLEKILPLILVPSSLWEVMHMLRLLGKHVRKNYMKFKIKFSLTQFHRI
IESAILSFTSLVKCLDLSKICKSVSTLQKSLCEVIESNLKQVKKNGIVDRLFEQQQTDMKKKLWKFVDEQ
LDYLFEKLKKILLKFCDSVNFENENSEGKLGKKYKERTQHSNCQKKKMDNKEIRREKVLKSENTVNFKSS
LGCEKSEEKHQDQNKTNASIVKHDVKRTFSTCSDNTKNAECKEQFLEKSCPSTPRPGKDEGHTEEEAQAA
QHASAKSERSFEILTEQQASSLTFNLVSDAQMGEIFKSLLQGSDLLDTSGTEKAEWELKTPEKQLLESLK
CESAPACATEELVSEGASLCPKVISDDNWSLLSSEKGPSLSSGLSLPVHPDVLDENCMFEVSSNTALGKD
NVYSSEKSKPCISSILLEDLAVSLTVPSPLKSDGHLSFLKPEVLSTSTPEEVISAHFSEDALLEEEDASE
QDIHLALESDNSSSKSSCSSWTSRSVASGFQYHPNLPMHAVIMEKSNDHFIVKIRRATPSTSPGLKHGVV
AEESLTSLPRTGKEAGVATEKEPNLFQSTVLKPVKDLENTDKNIDKSKLTHEEQNSIVQTQVPDIYEFLK
DASNKVVHCDQVVDDCFKLHQVWEPKVSENLQELPSMEKIPHSLDNHLPDTHIDLTKDSATETKSLGELM
EVTVLNVDHLECSQTNLDQDAEITCSSLQPDTIDAFIDLTHDASSESKNEGSEPVLAVEGMGCQVICIDE
DTNKEGKMGRANSPLESIVEETCIDLTSESPGSCEIKRHNLKSEPPSKLDCLELPETLGNGHKKRKNSPG
VSHSSQKKQRKDIDLSSEKTQRLSPNSDRNGDAHRKQASKKREPAVNETSLSSEASPEVKGSTAVLAASP
ASLSAKNVIKKKGEIIVSWTRNDDREILLECQKRMPSLKTFTYLAVKLNKNPNQVSERFQQLKKLFEKSK
CR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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