NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38572.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38572.2 Public Mus musculus 3 Dennd2c 23 108 98 CCDS HistoryNCBI Gene:329727Re-query CCDS DB by CCDS ID:38572.2Re-query CCDS DB by GeneID:329727See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 38572.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon, which appears to be reasonably conserved in a variety of mammals, would result in a protein that is 6 aa longer at the N-terminal.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 38572.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172288.2 ENSMUSP00000127187.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172288.2Link to Ensembl Protein Viewer:ENSMUSP00000127187.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000172288Re-query CCDS DB by Protein ID:ENSMUSP00000127187
Original member Current member NCBI NM_177857.2 NP_808525.2 Accepted alive Link to Nucleotide Sequence:NM_177857.2Link to Protein Sequence:NP_808525.2Re-query CCDS DB by Nucleotide ID:NM_177857Re-query CCDS DB by Protein ID:NP_808525Link to BLAST:NP_808525.2

Chromosomal Locations for CCDS 38572.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103131538 103132331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103133215 103133345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103133739 103133851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103137143 103137313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103141059 103141155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103146512 103146556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103149041 103149222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103152293 103152402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103153637 103153706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103154488 103154565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103156040 103156180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103156802 103156950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103157644 103157821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103161548 103161589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103162991 103163096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103165008 103165244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103166413 103166499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103167771 103167802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2763 nt):
ATGCACCCCACCGGGAACATGGATGTTGGCTTTACACGGTCTGCTGTTCAGACCTTGTCCAGGAGCCACT
GCAAAAACATCAAACAGAAGATTTCCCAGTGGGAAGGAAGAGCTAACGGTGTAACCAAGACAGCTAAGTT
TCACCCAAAGGACTTTGGAGTGAGGTATAACTGCCACCAAGAGAGTCCCCCTCATAAGCGTCCCACTGGT
GAGGAAAGGAATGGGGCTTTACCCAGAAACACGGATGTCAAAAGCCGAGATCAAAGTGAGGATGAAGGCG
AGGGTGGAGAGTGTAGAGGCTCCCACCCCTCGGAAGCTGGACTGGACTCCAGCCTGGTGTGTGCTCGGGT
CAAACAAATCGAAGGCTGCCAAGCTGTTGCTGTGGGTCCAGAGGCTTCCTTACCGCCAGGAAACTTCTAC
ACCTCCCAGATACCGTGGAGAAGCATAGACGGGCTCTCCCCAGATAAACCCTTAAATTTGGCCTTAGCAC
CTTGTAACTCTACAGGGAGAGAACCGGATCTCAGTGTTCTGGATAGTTCTTACGGAATAACCAAGAGCTT
GGAAAATATTTATTATGAACCTGAGGGGCAGGAATGTGGCCCCTCTATAAATCCTTTACCCAAACCCCGT
AGGACATTCAGGTATTTATCTGAATCTGATGGTATACCATATAAAGAAAGGAACTGTGATCAAAAGTACT
GTGAAAGTATTTCCTGTGTGGACCCTTCTTTGGCCTCTTCTCAGGATCCCGAACCAAAGAAATATGGCGG
GAAGATCAGAGGGCGGTCCAAAAGGAAATCCTTTGAATTTGAAGATATCCAGCACTTTCGGAACTCACGA
AAGATCCATGAAGAACTTGGAAGAAATGCTGGCTCAGCACTTTACTACACACAGTCCGAGGATAATATCT
ATGAGGATATTATATATCCAGCCAAGGAAAATCCATACGAAGATATCCCAGTGCAGTCGTTCCCTGTTTG
GAGATCCCCTTCAGCGTGGAGGCTGCCACCTGCTAAGAGCGCCTTCCGAACACCCAAGCTTCCTCCCAAA
CCCCAGTTCTTTCAGCGGAAGACTATGGAACTGAAGAATTCTCAAGCATATTTTCGATCAAAAATCACAA
AGGATACTACTTTGCCTGTCACCCTAACGGAATGGAAACTGTTCCGAGCTGGAGAGGTGGCTAACAAGAA
GAAGAGAAATCTCCCACCGCTTGTTTTGAAAATAAATGATACATTTGAATCTAAGAGAGGGAAGAAGAGG
GTAAAGTTACAGCCTTACACTGGAAAGGAAGCCCCCTCCTCAAAAGGTGAAACCAGTGGGAACGAGAGCG
ATGCCGAGTACCTGCCAAAGAATCGCCACAAGCGCTTGGCACAGCTGCAGCCGTCCTCCAAGAGGAACCC
CCACTACCAGACCTTGGAGCGCGACCTCATTGAGCTACAGGAGCAGCAGCTCTTTGAACTCTTCGTGGTG
GTTTCTCTGCAGAAGAAGCCGGCAGGGTACACTCCCCAGGTCATACAGCAGTTCCCTAGCAAGGGTGACC
ATGGCTACAAGCAGTCCAAAGACACTGAGGAAAGGCTCAAAGTCATCCCCAGGTTTTGTTTTCCTGATTC
AGAGGACAGCGCACCAACCTTAGAACTCAAGAGTGAAACCTTCTCCTTCGTGCTGACTGGAGAAGATGGA
AGCCGGTGGTTTGGCTACTGTAAGAAGCTTTTGCCAGAAGGCAGGGGAAAGCGGCTCCCTGAGGTGTACT
GCATGGTTAGTCGCTTGGGCTGCTTCAATCTTTTCTCAAAGATCCTGGATGAAGTAGAGAAGAGGAGAGA
GATGTCTCCAGCCCTTGTGTACCCATTCATGCGAAGTGTCATGGAAGCCCCTTTCCCAGCTCCTGGCCGC
ACCATCACAGTTAAGAGCTACCTCCCTGGGGCTGGAGATGAGTCAATTGAACTCTGCCGACCACTCGATT
CACGCCTGGAACATGTGGACTTTGAATGCCTTTTCAAATGCTTGAGTGTGCGTCATCTCATCCGGGTCTG
TGCCTCTCTCCTTCTCGAGCGGAGGGTAATCTTTGTTGCTAACAGCTTAAGCACCCTTTCAAAATGCGGC
CATGCTGTGGTAGCTACACTGTATCCGTTCACCTGGCAGCACACCTACATCCCAGTGCTGCCAGTGTCCA
TGATTGACATAGTGTGCTCACCTACTCCGTTCTTTATCGGGATCTTGTCTTGTTCCTTACCCCACCTCCA
GGACCTTCCGATTGAGGAGGTGCTGATAGTTGATCTCTGTGCAGACAGGTTCCTACAGGAGGTGTCTGAT
GAGGATGAAATTCTGCCACCTAAACTTCAAGCAGCCTTGGTGCAGATTTTAGAAGATCGAGATGAAGTCT
TGGCTCAGGAACAGCAGTTTTCACAAGAGGTGACACTCAGTTCTCTGGTGTCGGAAGCGTTCGTCAGGTT
TTTTGTGGAGCTCGTGGGGCATTATTCTCTGAACATGACTGTCACAGAGCGTGGGGAGCGTGTGTTCCAA
AGGGAGCCATTCCGGAAGTCCCACACTTCCCGAAGTGTCCGCCACTTCCTAGATCTCTTCATGGAGACAC
AGATGTTTGCAGGATTTGTCCAGGACCGGGAGCTTCGGCAAAGCGGAGTTAAAGGTTTGTTTGAAGTCCG
GGCTCTTCAATATTTGGAAACAATTCCTGAGTCGGAACCCAGCGGGGTGAATAGAATTTTACGTAGTCTT
GGAAGTAAAATGAAATTTCTTCACAAGAAGTGA

Translation (920 aa):
MHPTGNMDVGFTRSAVQTLSRSHCKNIKQKISQWEGRANGVTKTAKFHPKDFGVRYNCHQESPPHKRPTG
EERNGALPRNTDVKSRDQSEDEGEGGECRGSHPSEAGLDSSLVCARVKQIEGCQAVAVGPEASLPPGNFY
TSQIPWRSIDGLSPDKPLNLALAPCNSTGREPDLSVLDSSYGITKSLENIYYEPEGQECGPSINPLPKPR
RTFRYLSESDGIPYKERNCDQKYCESISCVDPSLASSQDPEPKKYGGKIRGRSKRKSFEFEDIQHFRNSR
KIHEELGRNAGSALYYTQSEDNIYEDIIYPAKENPYEDIPVQSFPVWRSPSAWRLPPAKSAFRTPKLPPK
PQFFQRKTMELKNSQAYFRSKITKDTTLPVTLTEWKLFRAGEVANKKKRNLPPLVLKINDTFESKRGKKR
VKLQPYTGKEAPSSKGETSGNESDAEYLPKNRHKRLAQLQPSSKRNPHYQTLERDLIELQEQQLFELFVV
VSLQKKPAGYTPQVIQQFPSKGDHGYKQSKDTEERLKVIPRFCFPDSEDSAPTLELKSETFSFVLTGEDG
SRWFGYCKKLLPEGRGKRLPEVYCMVSRLGCFNLFSKILDEVEKRREMSPALVYPFMRSVMEAPFPAPGR
TITVKSYLPGAGDESIELCRPLDSRLEHVDFECLFKCLSVRHLIRVCASLLLERRVIFVANSLSTLSKCG
HAVVATLYPFTWQHTYIPVLPVSMIDIVCSPTPFFIGILSCSLPHLQDLPIEEVLIVDLCADRFLQEVSD
EDEILPPKLQAALVQILEDRDEVLAQEQQFSQEVTLSSLVSEAFVRFFVELVGHYSLNMTVTERGERVFQ
REPFRKSHTSRSVRHFLDLFMETQMFAGFVQDRELRQSGVKGLFEVRALQYLETIPESEPSGVNRILRSL
GSKMKFLHKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH