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Report for CCDS53168.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53168.2 Public Mus musculus X Magt1 23 108 98 CCDS HistoryNCBI Gene:67075Re-query CCDS DB by CCDS ID:53168.2Re-query CCDS DB by GeneID:67075See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 53168.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by transcript and conservation data.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 53168.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113566.9 ENSMUSP00000109196.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113566.9Link to Ensembl Protein Viewer:ENSMUSP00000109196.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113566Re-query CCDS DB by Protein ID:ENSMUSP00000109196
Original member Current member EBI ENSMUST00000151689.8 ENSMUSP00000120994.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151689.8Link to Ensembl Protein Viewer:ENSMUSP00000120994.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000151689Re-query CCDS DB by Protein ID:ENSMUSP00000120994
Original member Current member NCBI NM_001190409.2 NP_001177338.2 Accepted alive Link to Nucleotide Sequence:NM_001190409.2Link to Protein Sequence:NP_001177338.2Re-query CCDS DB by Nucleotide ID:NM_001190409Re-query CCDS DB by Protein ID:NP_001177338Link to BLAST:NP_001177338.2
Original member Current member NCBI NM_025952.5 NP_080228.5 Accepted alive Link to Nucleotide Sequence:NM_025952.5Link to Protein Sequence:NP_080228.5Re-query CCDS DB by Nucleotide ID:NM_025952Re-query CCDS DB by Protein ID:NP_080228Link to BLAST:NP_080228.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177338.2 335 Q9CQY5-1 335 100% 0 0
NP_080228.5 335 Q9CQY5-1 335 100% 0 0

Chromosomal Locations for CCDS 53168.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 105971464 105971479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105974185 105974275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105979406 105979480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105983710 105983773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105984366 105984455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105988971 105989111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105989390 105989530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105992398 105992515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105996822 105996991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106011662 106011763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGCCTCGCCAAGGTGGTTCTGGTCTGTGTGTGCGATCGCAGCGGTGGCACTGCTGCTCGTTTCCAAGG
TTCCTTCGGCCTCTGCCCAAAGAAAGAAGGAGATGGTGTTATCTGAGAAGGTTAGTCAGCTGATGGAATG
GGCCAATAAGAGACCTGTAATAAGAATGAATGGAGACAAGTTCCGTCGTCTTGTTAAAGCTCCACCGAGA
AATTACTCAGTTGTCGTCATGTTTACTGCTCTCCAACTTCATAGACAATGTGTCGTTTGCAAGCAAGCTG
ATGAAGAATTCCAGATTTTGGCAAATTCTTGGCGATACTCCAATGCATTTACCAACAGGATATTTTTTGC
CATGGTGGATTTTGATGAAGGCTCAGATGTATTTCAAATGCTAAACATGAATTCAGCTCCAACTTTCATC
AACTTTCCTCCGAAAGGAAAACCCAAAAGGGCTGATACATATGAGTTGCAGGTGCGAGGGTTTTCAGCTG
AGCAGATTGCCCGGTGGATTGCAGACAGAACTGATGTCAACATTAGAGTAATTAGACCTCCAAATTATGC
TGGACCCCTAATGTTGGGACTGCTGCTGGCTGTTATTGGTGGACTTGTGTATCTGCGAAGAAGCAATATG
GAGTTCCTCTTTAATAAAACTGGATGGGCTTTTGCAGCTTTGTGTTTTGTACTTGCTATGACATCTGGCC
AAATGTGGAACCATATAAGAGGACCACCATATGCTCATAAAAATCCCCACACAGGACACGTGAATTACAT
CCACGGGAGCAGCCAGGCCCAGTTTGTAGCTGAAACCCACATCGTTCTTCTATTCAATGGTGGGGTTACC
TTAGGAATGGTGCTTTTATGTGAAGCTGCTACCTCTGACATGGATATTGGGAAGCGAAGGATGATGTGTA
TTGCTGGGATTGGACTCGTTGTGTTATTCTTCAGTTGGATGCTCTCTATCTTTCGATCAAAATACCATGG
CTATCCATACAGCTTTCTGATGAGTTAA

Translation (335 aa):
MASPRWFWSVCAIAAVALLLVSKVPSASAQRKKEMVLSEKVSQLMEWANKRPVIRMNGDKFRRLVKAPPR
NYSVVVMFTALQLHRQCVVCKQADEEFQILANSWRYSNAFTNRIFFAMVDFDEGSDVFQMLNMNSAPTFI
NFPPKGKPKRADTYELQVRGFSAEQIARWIADRTDVNIRVIRPPNYAGPLMLGLLLAVIGGLVYLRRSNM
EFLFNKTGWAFAALCFVLAMTSGQMWNHIRGPPYAHKNPHTGHVNYIHGSSQAQFVAETHIVLLFNGGVT
LGMVLLCEAATSDMDIGKRRMMCIAGIGLVVLFFSWMLSIFRSKYHGYPYSFLMS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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