NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51779.1 Public Mus musculus 6 Wipf3 23 108 98 CCDS HistoryNCBI Gene:330319Re-query CCDS DB by CCDS ID:51779.1Re-query CCDS DB by GeneID:330319See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000132855.7 ENSMUSP00000120240.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132855.7Link to Ensembl Protein Viewer:ENSMUSP00000120240.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132855Re-query CCDS DB by Protein ID:ENSMUSP00000120240
Original member Current member EBI ENSMUST00000172046.1 ENSMUSP00000132138.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172046.1Link to Ensembl Protein Viewer:ENSMUSP00000132138.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172046Re-query CCDS DB by Protein ID:ENSMUSP00000132138
Original member Current member NCBI NM_001167860.2 NP_001161332.1 Accepted alive Link to Nucleotide Sequence:NM_001167860.2Link to Protein Sequence:NP_001161332.1Re-query CCDS DB by Nucleotide ID:NM_001167860Re-query CCDS DB by Protein ID:NP_001161332Link to BLAST:NP_001161332.1

Chromosomal Locations for CCDS 51779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 54452883 54453005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54481785 54481917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54483825 54483959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54485198 54485932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54487908 54488030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54489008 54489109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54496480 54496556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54500993 54501016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGCCGGTGCCACCGCCACCACCGCCACCACCTCCACCTCCACCTCCACCCCCTCCACCACTAGGGGCTC
CACCCCCTCCACCACTTGGGGCGCCACCCCCTCCACCCCCACCAGGGCCTCCGGTCAGCACAGACACCCC
CAGCTTAAGGAAGCCAGATCTGAAAGGCCGGAGTGCACTGTTGGCTGATATCCAGCAAGGAACACGCCTG
CGGAAAGTCACCCAGATCAATGACCGCAGTGCCCCACAGATCGAGGGTTCAAAAGGAACCAGCAAAGAGG
GAGGAGCTGCTGGCAGCAATGCCAGGGGAGGAAACACACCCCCTGCCCTGGGAGATCTCTTTGCTGGTGG
CTTTCCTGTGTTGAGACCGGCAGGCCAGAGAGATGTGTCAGGTGGCAAGTCCGGGCAGGGCCCTGGCTCC
CGAGCACCTTCTCCCCGGCTCCCTATCAAAGCCATCAGCGGCCCGCTTCCCGCTCCTGCATCTCCCAGGC
TAGGCAATGCCTCAGAGACGCACAGCTCTGCCAGGCCTGTCCCTCCTCGCCCCAGTGTGCCTGCCCCACC
ACCTCCCACTCCACCCCCACCCCCACCTCCGCCCCTCCCCCCAGCCTCCCCCATCAAAGCCCAGTTGGTG
TCCCCGCCTGCCCCTCCAACCAAGGTGAATCCATCTGTGGTGCCACCTCCTCTACCCTGCGCACCTCCTC
TTCCGCCCCCTCCCCCGACTCCGCCCCCGCTGCCCCCAGCCTCGGCGCTGAGCGACAAGGCAGTGAGGCC
CCAACTAGCCCCACTGCACCTGCCACCCATCCCACCCCCGCTCCCTCTCCTTCCACCCTGTGGGTACCCC
GGGCTCCACTCAGAGCCCAACAGCCCTGCACAGGAGGTGCGAGAACCTCCAGCTCCGCCACCGCCACCAC
CCCCACCTCCGCCACCACCGCTCCCCACCTATGCCTCTTGCTCCTCGAGGACCGCTGTGGCCCCGCCCCC
TTTGCCAGGCGCAAACAACAGCGGCAGCGAGACTCCTCCCCCGTTGCCCCCCAAGTCCCCCAGCTTCCAG
ACGCAGAAGGCCTTGCCCACACCTCCAGGTGCTCCCGGCCCTCAGGCTATCCTGCAGAAGAAGCGGCGAG
GCCCAGGAACCAGTGGGGGAAAGCTAAACCCACCTCCAGCCCCACCTGCAAGATCGCCCACCACAGAGCT
TTCCAGCAAAAGCCAGCAGCCTGGAGGCCAGCTGCGGAATGGAGGCCAGCACGCGATTGATGACTTCGAG
TCTAAATTCACGTTCCACTCCATGGAAGACTTTCCCCCTCCAGATGAATACAAACCATGTCAGAAGATTT
ACCCCAGCAAGGTCCCCAGAAGCCGCACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGGGCAGAGCTC
TGATGACATCAAAAGCAGAAACTCTCAGTTATCTCTGAAGGCACTCCGGTGA

Translation (483 aa):
MPVPPPPPPPPPPPPPPPPPLGAPPPPPLGAPPPPPPPGPPVSTDTPSLRKPDLKGRSALLADIQQGTRL
RKVTQINDRSAPQIEGSKGTSKEGGAAGSNARGGNTPPALGDLFAGGFPVLRPAGQRDVSGGKSGQGPGS
RAPSPRLPIKAISGPLPAPASPRLGNASETHSSARPVPPRPSVPAPPPPTPPPPPPPPLPPASPIKAQLV
SPPAPPTKVNPSVVPPPLPCAPPLPPPPPTPPPLPPASALSDKAVRPQLAPLHLPPIPPPLPLLPPCGYP
GLHSEPNSPAQEVREPPAPPPPPPPPPPPPLPTYASCSSRTAVAPPPLPGANNSGSETPPPLPPKSPSFQ
TQKALPTPPGAPGPQAILQKKRRGPGTSGGKLNPPPAPPARSPTTELSSKSQQPGGQLRNGGQHAIDDFE
SKFTFHSMEDFPPPDEYKPCQKIYPSKVPRSRTPGSWLQAEAAGQSSDDIKSRNSQLSLKALR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH