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Report for CCDS80895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80895.1 Public Mus musculus 8 Pgls 23 108 98 CCDS HistoryNCBI Gene:66171Re-query CCDS DB by CCDS ID:80895.1Re-query CCDS DB by GeneID:66171See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80895.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143441.1 ENSMUSP00000116524.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143441.1Link to Ensembl Protein Viewer:ENSMUSP00000116524.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143441Re-query CCDS DB by Protein ID:ENSMUSP00000116524
Original member Current member NCBI NM_001294269.1 NP_001281198.1 Accepted alive Link to Nucleotide Sequence:NM_001294269.1Link to Protein Sequence:NP_001281198.1Re-query CCDS DB by Nucleotide ID:NM_001294269Re-query CCDS DB by Protein ID:NP_001281198Link to BLAST:NP_001281198.1

Chromosomal Locations for CCDS 80895.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71592750 71592788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71594084 71594191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71594669 71594770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71595061 71595201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71596057 71596191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGTCCATCCAAGTGCAGCCTGACGGGCCTCCGTCCCCCACACACCTGCTCTCAAAGCTGCCCATCCCAG
ACAGCCAGGTCCTTACCATCAATCCTGCCCTACCTGTGGAGGATGCTGCAGAGGACTATGCCAGGAAACT
GAGACAGGCCTTGCAAGGAGACGCTGTCCCTGTGTTTGACCTGCTGATCCTGGGAGTGGGCCCTGACGGC
CATACCTGTTCGCTCTTCCCTGACCATCCCCTCCTACAGGAGCGGGAGAAGATCGTGGCTCCCATCAGTG
ACTCCCCAAAGCCACCACCGCAGAGGGTGACCCTAACGCTTCCTGTGCTGAACGCAGCCCAAAGTATCAT
CTTTGTGGCCACGGGGGAAGGCAAGGCAGCTGTGCTGAAGCGCATCCTGGAGGACAAGGAGGGCACGTTG
CCCGCCGCCTTGGTGCAGCCGCGCACGGGCGCCCTCTGCTGGTTCCTGGACGAGGCAGCTGCCCGGCTGC
TGTCTGTGCCCTTCGAGAAGCATTCCACATTGTAG

Translation (174 aa):
MSIQVQPDGPPSPTHLLSKLPIPDSQVLTINPALPVEDAAEDYARKLRQALQGDAVPVFDLLILGVGPDG
HTCSLFPDHPLLQEREKIVAPISDSPKPPPQRVTLTLPVLNAAQSIIFVATGEGKAAVLKRILEDKEGTL
PAALVQPRTGALCWFLDEAAARLLSVPFEKHSTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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