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Report for CCDS21406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21406.1 Public Mus musculus 7 Ramac 23 108 98 CCDS HistoryNCBI Gene:67148Re-query CCDS DB by CCDS ID:21406.1Re-query CCDS DB by GeneID:67148See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042166.10 ENSMUSP00000039065.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042166.10Link to Ensembl Protein Viewer:ENSMUSP00000039065.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000042166Re-query CCDS DB by Protein ID:ENSMUSP00000039065
Original member Current member EBI ENSMUST00000118190.1 ENSMUSP00000113339.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118190.1Link to Ensembl Protein Viewer:ENSMUSP00000113339.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118190Re-query CCDS DB by Protein ID:ENSMUSP00000113339
Original member Current member NCBI NM_025997.2 NP_080273.1 Accepted alive Link to Nucleotide Sequence:NM_025997.2Link to Protein Sequence:NP_080273.1Re-query CCDS DB by Nucleotide ID:NM_025997Re-query CCDS DB by Protein ID:NP_080273Link to BLAST:NP_080273.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080273.1 119 Q9CQY2 119 100% 0 0

Chromosomal Locations for CCDS 21406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 81767554 81767723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81768369 81768558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGAGTGATACTTCTGAAGAAATTCCAAATTTTGAAGAGATGTTTGCAAGCAGATTCACGAAAGATGACA
AAGAATACCAGGAATACTTGAAACGCCCTCCTGAGTCCCCTCCAATTGTTGAGGAATGGAATAGCAGAGC
TGGTGGTAACCAAAGAAATAGAGGCAACTGGCTGCAAGACAACAGACAATTTAGAGGTAGGGATAACAGA
CGAGGATGGCCAAGTGACAATCGGTCAAATCAGTGGCATGGACGGTCATGGGGTAACAACAACTACCCAC
AGCAGAGACCAGAGCCCTACTATCAACAACAGTACACACAGTATGGCCACAACCAGCGGCCTCCATATGG
TTACTATTGA

Translation (119 aa):
MSDTSEEIPNFEEMFASRFTKDDKEYQEYLKRPPESPPIVEEWNSRAGGNQRNRGNWLQDNRQFRGRDNR
RGWPSDNRSNQWHGRSWGNNNYPQQRPEPYYQQQYTQYGHNQRPPYGYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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