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Report for CCDS49715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49715.1 Public Mus musculus 15 Slc48a1 23 108 98 CCDS HistoryNCBI Gene:67739Re-query CCDS DB by CCDS ID:49715.1Re-query CCDS DB by GeneID:67739See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49715.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117892.1 ENSMUSP00000112644.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117892.1Link to Ensembl Protein Viewer:ENSMUSP00000112644.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117892Re-query CCDS DB by Protein ID:ENSMUSP00000112644
Original member Current member NCBI NM_026353.4 NP_080629.1 Accepted alive Link to Nucleotide Sequence:NM_026353.4Link to Protein Sequence:NP_080629.1Re-query CCDS DB by Nucleotide ID:NM_026353Re-query CCDS DB by Protein ID:NP_080629Link to BLAST:NP_080629.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080629.1 146 Q9D8M3 146 100% 0 0

Chromosomal Locations for CCDS 49715.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 97784481 97784616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97789903 97790070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97790587 97790723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGGCCCCGTCCCGGCTGCAGCTCGGCCTCCGCGCCGCCTACTCCGGCTTCAGCTCGGTAGCCGGCTTCT
CCATCTTCTTCGTCTGGACGGTGGTCTACCGACAACCGGGGACTGCGGCGATGGGGGGTCTCGCAGGTGT
CCTGGCACTGTGGGTCTTGGTGACTCACGTGATGTACATGCAGGATTACTGGAGGACCTGGCTCAGAGGG
CTGCGCGGCTTCTTCTTCGTGGGTGCTCTCTTCTCGGCAGTCTCCGTTTCCGCCTTCTGCACCTTCCTGG
CATTGGCCATCACCCAGCATCAGAGTCTCAAAGACCCGAACAGCTACTACCTCTCCTGTGTCTGGAGCTT
CATTTCCTTCAAGTGGGCCTTCCTACTTAGCCTCTACGCCCACCGCTACCGGGCTGACTTTGCGGACATC
AGCATCCTTAGTGATTTCTAA

Translation (146 aa):
MAPSRLQLGLRAAYSGFSSVAGFSIFFVWTVVYRQPGTAAMGGLAGVLALWVLVTHVMYMQDYWRTWLRG
LRGFFFVGALFSAVSVSAFCTFLALAITQHQSLKDPNSYYLSCVWSFISFKWAFLLSLYAHRYRADFADI
SILSDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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