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Report for CCDS39429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39429.1 Public Mus musculus 6 Tes 23 108 98 CCDS HistoryNCBI Gene:21753Re-query CCDS DB by CCDS ID:39429.1Re-query CCDS DB by GeneID:21753See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115467.10 ENSMUSP00000111127.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115467.10Link to Ensembl Protein Viewer:ENSMUSP00000111127.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000115467Re-query CCDS DB by Protein ID:ENSMUSP00000111127
Original member Current member NCBI NM_207176.3 NP_997059.1 Accepted alive Link to Nucleotide Sequence:NM_207176.3Link to Protein Sequence:NP_997059.1Re-query CCDS DB by Nucleotide ID:NM_207176Re-query CCDS DB by Protein ID:NP_997059Link to BLAST:NP_997059.1

Chromosomal Locations for CCDS 39429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 17065287 17065313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17086137 17086222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17096128 17096380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17097261 17097590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17099704 17099919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17100282 17100440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17104593 17104781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGACCTGGAAACCAAAATGAAGAAGATGGGCTTAGGTCATGAGCAAGGATTTGGAGCCCCCTGTCTAA
AATGCAAAGAGAACTGTGAAGGATTTGAACTACACTTCTGGAGGAAAATATGTCGTAACTGCAAATGTGG
TCAAGAAGAGCATGACGTCCTCCTGAGCAATGAGGAGGACCGGAAAGTGGGGAGACTCTTTGAGGACACT
AAGTACACCACCCTGATCGCCAAGCTGAAGTCAGATGGCATTCCCATGTACAAACGCAACGTTATGATCT
TGACCAATCCAGTGGCTGCCAAGAAGAACGTCTCCATCAACACAGTTACCTATGAGTGGGCTCCCCCAGT
TCAAAACCAGGCTCTGGCCAGGCAGTACATGCAGATGCTGCCTAAGGAGAAGCAGCCAGTGGCAGGTTCA
GAGGGGGCACAGTACCGGAAGAAGCAGCTGGCGAAACAGCTCCCGGCTCATGACCAGGATCCTTCTAAGT
GCCATGAGTTGTCTCCCAAAGAGGTGAAGGAGATGGAGCAGTTTGTGAAGAAATACAAGAGTGAGGCCCT
GGGCGTGGGTGACGTGAAGTTTCCCTCTGAGATGAATGCTCAGGGTGACAAGGTGCACAACCCTGCGGGG
AACAGACACGCCCCAGCAGCAGTGGCTTCCAAGGACAAGTCTGCAGAATCCAAGAAGACCCAGTATTCCT
GTTACTGCTGCAAACACACCATGAACGAAGGCGAGCCGGCCATCTATGCTGAAAGGGCTGGCTACGATAA
GCTCTGGCACCCGGCGTGTTTTATCTGCAGCACCTGTGGTGAACTCCTGGTCGACATGATTTACTTCTGG
AAGAATGGGAAGCTGTACTGTGGCAGACATTACTGTGACAGTGAGAAGCCCCGCTGTGCTGGCTGTGACG
AGCTGATATTCAGCAATGAATATACCCAAGCAGAAAACCAGAATTGGCACCTGAAGCACTTCTGCTGCTT
TGACTGCGACCACATCCTAGCAGGGAAAATCTACGTGATGGTCACTGACAAGCCTGTGTGCAAGCCCTGC
TATGTGAAGAACCATGCTGTGGTGTGTCAAGGATGCCACAATGCCATCGACCCGGAAGTGCAGCGAGTAA
CGTACAACAACTTCAGCTGGCACGCATCCACAGAGTGTTTCCTGTGCTCTTGCTGCAGCAAGTGTCTTAT
CGGGCAGAAGTTCATGCCCGTAGAAGGGATGGTTTTCTGTTCCGTGGAGTGTAAGAGGATGATGTCCTAA

Translation (419 aa):
MDLETKMKKMGLGHEQGFGAPCLKCKENCEGFELHFWRKICRNCKCGQEEHDVLLSNEEDRKVGRLFEDT
KYTTLIAKLKSDGIPMYKRNVMILTNPVAAKKNVSINTVTYEWAPPVQNQALARQYMQMLPKEKQPVAGS
EGAQYRKKQLAKQLPAHDQDPSKCHELSPKEVKEMEQFVKKYKSEALGVGDVKFPSEMNAQGDKVHNPAG
NRHAPAAVASKDKSAESKKTQYSCYCCKHTMNEGEPAIYAERAGYDKLWHPACFICSTCGELLVDMIYFW
KNGKLYCGRHYCDSEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDHILAGKIYVMVTDKPVCKPC
YVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKRMMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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