NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37487.1 Public Mus musculus 17 Rnps1 23 108 98 CCDS HistoryNCBI Gene:19826Re-query CCDS DB by CCDS ID:37487.1Re-query CCDS DB by GeneID:19826See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115371.8 ENSMUSP00000111028.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115371.8Link to Ensembl Protein Viewer:ENSMUSP00000111028.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115371Re-query CCDS DB by Protein ID:ENSMUSP00000111028
Original member Current member NCBI NM_001080128.1 NP_001073597.1 Accepted alive Link to Nucleotide Sequence:NM_001080128.1Link to Protein Sequence:NP_001073597.1Re-query CCDS DB by Nucleotide ID:NM_001080128Re-query CCDS DB by Protein ID:NP_001073597Link to BLAST:NP_001073597.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073597.1 282 Q99M28-2 282 100% 0 0

Chromosomal Locations for CCDS 37487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24414733 24414734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24418457 24418612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24420206 24420397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24421749 24421851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24422150 24422303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24424402 24424543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24425086 24425185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGGCTCCTTCTCCTACCAAACGCAAGGACCGATCTGATGAGAAGTCCAAGGATCGATCTAAAGATAAAG
GGGCCACTAAAGAGTCAAGTGAGAAGGATCGTGGCAGAGATAAGACTCGGAAGAGACGCAGTGCTTCAAG
CGGAAGCAGCAGTACCAGGTCTAGGTCCAGCTCCACCTCCAGCTCGGGCTCCAGCACCAGCACAGGCTCA
AGCAGTGGCTCCAGCTCGTCCTCTGCATCCAGCCGCTCAGGAAGCTCCAGCACGTCCCGGAGCTCCAGTT
CTAGCAGCTCCTCCGGCTCCCCAAGCCCTTCTCGGCGCAGGCATGACAACAGGCGGCGCTCCCGCTCCAA
ATCCAAACCACCTAAAAGAGATGAAAAAGAGAGGAAAAGGCGGAGCCCTTCACCTAAACCAACCAAAGTG
CACATTGGGAGGCTCACCAGGAATGTGACCAAGGATCATATCATGGAAATATTTTCTACTTACGGGAAAA
TTAAAATGATTGACATGCCTGTTGAGAGGATGCATCCTCACCTCTCCAAAGGCTATGCATATGTGGAGTT
TGAGAATCCCGATGAAGCAGAGAAGGCTCTGAAACACATGGATGGAGGACAAATTGATGGCCAAGAGATC
ACTGCTACTGCTGTGTTGGCACCCTGGCCTCGGCCACCACCTCGGCGATTCAGCCCCCCTAGGAGGATGC
TTCCACCACCTCCCATGTGGCGTAGGTCACCCCCACGGATGAGGAGAAGGTCTCGATCCCCAAGACGCAG
GTCCCCTGTGCGTAGGAGGTCTCGCTCTCCTGGCCGCCGCCGCCACAGGAGCCGATCCAGCTCCAACTCC
TCCCGATAA

Translation (282 aa):
MAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGS
SSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKV
HIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI
TATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNS
SR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH