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Report for CCDS41155.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41155.1 Public Mus musculus X Nxt2 23 108 98 CCDS HistoryNCBI Gene:237082Re-query CCDS DB by CCDS ID:41155.1Re-query CCDS DB by GeneID:237082See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41155.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042329.11 ENSMUSP00000048221.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042329.11Link to Ensembl Protein Viewer:ENSMUSP00000048221.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000042329Re-query CCDS DB by Protein ID:ENSMUSP00000048221
Original member Current member EBI ENSMUST00000112914.7 ENSMUSP00000108536.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112914.7Link to Ensembl Protein Viewer:ENSMUSP00000108536.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112914Re-query CCDS DB by Protein ID:ENSMUSP00000108536
Original member Current member NCBI NM_001161430.2 NP_001154902.1 Accepted alive Link to Nucleotide Sequence:NM_001161430.2Link to Protein Sequence:NP_001154902.1Re-query CCDS DB by Nucleotide ID:NM_001161430Re-query CCDS DB by Protein ID:NP_001154902Link to BLAST:NP_001154902.1
Original member Current member NCBI NM_172782.4 NP_766370.2 Accepted alive Link to Nucleotide Sequence:NM_172782.4Link to Protein Sequence:NP_766370.2Re-query CCDS DB by Nucleotide ID:NM_172782Re-query CCDS DB by Protein ID:NP_766370Link to BLAST:NP_766370.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154902.1 142 Q3UNA4-1 142 100% 0 0
NP_766370.2 142 Q3UNA4-1 142 100% 0 0

Chromosomal Locations for CCDS 41155.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 142228367 142228381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142229524 142229610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142236784 142236928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142237646 142237827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGCCTTGGCAGTGAATTTTAAAACTTATGTGGATCAGGCATGTAGAGCTGCCGAGGAATTTGTCAATA
TTTACTATGAGACAATGGACAAAAGACGACATGCACTTGTCAGGCTGTATTTGGACAAAGCCACTCTAAT
CTGGAATGGAAATGTTGTTACAGGGCTGGAAGCCCTTGCTAATTTTTTTGAGATGTTGCCTTCCAGCGAA
TTCCAGATCAATATGTTAGATTGCCAACCAGTTCATGAGCAAGCTACCCAGTGCCAAACTACAGTGCTCG
TTGTGACCAGTGGAGTTGTGAAGTTTGATGGAAACAAGCAGCACTTCTTTAACCAGAACTTCCTGCTGAC
TGCGCAGAGCACTCCTAACAGCACTGTGTGGAAGATTGCAAGTGATTGCTTCCGTTTTCAAGATTGGGCT
AGTATTTAA

Translation (142 aa):
MALAVNFKTYVDQACRAAEEFVNIYYETMDKRRHALVRLYLDKATLIWNGNVVTGLEALANFFEMLPSSE
FQINMLDCQPVHEQATQCQTTVLVVTSGVVKFDGNKQHFFNQNFLLTAQSTPNSTVWKIASDCFRFQDWA
SI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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