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Report for CCDS38234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38234.1 Public Mus musculus 2 Tmem87b 23 108 98 CCDS HistoryNCBI Gene:72477Re-query CCDS DB by CCDS ID:38234.1Re-query CCDS DB by GeneID:72477See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38234.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110325.7 ENSMUSP00000105954.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110325.7Link to Ensembl Protein Viewer:ENSMUSP00000105954.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110325Re-query CCDS DB by Protein ID:ENSMUSP00000105954
Original member Current member NCBI NM_028248.2 NP_082524.2 Accepted alive Link to Nucleotide Sequence:NM_028248.2Link to Protein Sequence:NP_082524.2Re-query CCDS DB by Nucleotide ID:NM_028248Re-query CCDS DB by Protein ID:NP_082524Link to BLAST:NP_082524.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082524.2 555 Q8BKU8-1 555 100% 0 0

Chromosomal Locations for CCDS 38234.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 128818339 128818503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128823083 128823143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128824416 128824510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128826257 128826388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128828406 128828456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128830510 128830600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128831198 128831259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128831450 128831633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128834115 128834214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128837302 128837395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128839148 128839219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128841235 128841343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128841425 128841483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128842596 128842699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128845461 128845534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128846729 128846799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128849005 128849057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128850304 128850334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128851284 128851343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGCTGCCGCCTGTCGGTCTGAGGCTGGCCTCCTTCCCAGCCTCCTCTGCCGCCGGCCCGCCGGGGCCC
AGCTGCTGCGAGTTGCCCTGTGTCTCCTGTGCTGGGTCCCGGCGGCTGTGGACGCAGTCCCCGAGCTCGG
GCTTTGGACGAGGACGGTCAATGACAAATCAGGACCTTTGGTATTCAGGAAAACTATGTTTAACTCTACT
GAGATCAAGTTTTCTGTGAAGTCGTTCAGTTGTTCTGGACCTGTGAAGTTTACCATAGAGTGGCATTTGA
AGTATCATACCTGTCACAATGATTACCCTGATCTGGAGGAGGAGCTGTCCCAAAGACATGAACTTCATGC
TGATCCAGATGTCTGTGCTTACTTCAAAAACATTGACTGTTGGACAACAAAAAGTGAAAACTTGGATTGC
AGCAGTGATTCACAGGCATTTCCCTCATTGAATAATAAAGAACTAACAGGTATCAGAAACATTTCAAGCC
AGGAAGGATCAACGGATGTTGTAGCCAGGACCCAGAAAGATGGCTTCCATATCTTCATTGTTTCTATTAA
AACGGAGAAAACAGATGCAGTCTGGGATTTAAATGTTTCTCTTTCTATGGTGGGTCCTCATGGGTACATC
TCTGCATCAGACTGGCCTCTCATGATTTTTTATATGGTGATGTGTATCGTTTACATATTATATGGTGTCC
TCTGGCTGCTGTGGTCTGCCTGTTACTGGAAAGATATATTAAGAATTCAGTTCTGGATTGCAGCTGTTAT
TTTCCTAGGAATGCTTGAAAAGGCAGTTTTTTATAGTGAATACCAAAACATCAACAGCACTGGACTGTCA
ACTCAAGGTTTACTGATATTTGCAGAGCTGATATCTGCAGTTAAGAGGACATTGGCTCGCCTGCTTGTGA
TCATTGTGAGCTTGGGTTATGGCATTGTGAAGCCTCGCTTAGGAACAGTGATGCACCGGGTGATTGGACT
GGGACTGCTTTACTTGATCTTTGCAGCCATTGAAGGCGTCATGAGAGTCATCGGGGGTTCTAAACATTTA
GCTGTTGTTTTGACTGACATTGTTTTAGCAGTTATTGACTCCATTTTTGTGTGGTTCATTTTTATAAGTT
TGGCACAGACTATGAAGACTCTAAGGCTAAGAAAGAACACAGTGAAATTTTCATTGTATAGGCATTTTAC
AAATACACTCATCTTTGCAGTGCTGGCTTCTATAGTGTTTATGGTGTGGACAACAAAGACCTTCAGGATC
GCAAAATGCCAATCAGACTGGATGGAGCTGTGGGTTGACGATGCGTTTTGGAGCTTCCTCTTTTCAGTCA
TCCTTATTGTGATAATGTTCTTATGGAGGCCGTCAGCAAATAATCAGAGGTATGCCTTCATGCCCTTGAT
AGATGACTCTGATGATGAAGTCGAGGAATTCATGGTAACATCTGAAAATTTAACTGAGGGAATAAAACTA
AGAGCCTCAAAAACGGTTTCAAACGGAACAGCTAAACCTACGTCTGATAATTTTGATGAAGATTTGAAGT
GGGTGGAAGAAAACATTCCCTCTTCGTTCACAGATGTAGCTCTCCCAGTGTTAGTGGACTCAGATGAGGA
AATTATGACCAGATCTGAAATAGCTGAAAAAATGTTCTCTTCAGAAAAGATAATGTGA

Translation (555 aa):
MAAACRSEAGLLPSLLCRRPAGAQLLRVALCLLCWVPAAVDAVPELGLWTRTVNDKSGPLVFRKTMFNST
EIKFSVKSFSCSGPVKFTIEWHLKYHTCHNDYPDLEEELSQRHELHADPDVCAYFKNIDCWTTKSENLDC
SSDSQAFPSLNNKELTGIRNISSQEGSTDVVARTQKDGFHIFIVSIKTEKTDAVWDLNVSLSMVGPHGYI
SASDWPLMIFYMVMCIVYILYGVLWLLWSACYWKDILRIQFWIAAVIFLGMLEKAVFYSEYQNINSTGLS
TQGLLIFAELISAVKRTLARLLVIIVSLGYGIVKPRLGTVMHRVIGLGLLYLIFAAIEGVMRVIGGSKHL
AVVLTDIVLAVIDSIFVWFIFISLAQTMKTLRLRKNTVKFSLYRHFTNTLIFAVLASIVFMVWTTKTFRI
AKCQSDWMELWVDDAFWSFLFSVILIVIMFLWRPSANNQRYAFMPLIDDSDDEVEEFMVTSENLTEGIKL
RASKTVSNGTAKPTSDNFDEDLKWVEENIPSSFTDVALPVLVDSDEEIMTRSEIAEKMFSSEKIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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