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Report for CCDS17874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17874.1 Public Mus musculus 3 Bmpr1b 23 108 98 CCDS HistoryNCBI Gene:12167Re-query CCDS DB by CCDS ID:17874.1Re-query CCDS DB by GeneID:12167See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17874.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029948.14 ENSMUSP00000029948.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029948.14Link to Ensembl Protein Viewer:ENSMUSP00000029948.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029948Re-query CCDS DB by Protein ID:ENSMUSP00000029948
Original member Current member EBI ENSMUST00000098568.7 ENSMUSP00000096167.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098568.7Link to Ensembl Protein Viewer:ENSMUSP00000096167.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000098568Re-query CCDS DB by Protein ID:ENSMUSP00000096167
Original member Current member EBI ENSMUST00000106230.1 ENSMUSP00000101837.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106230.1Link to Ensembl Protein Viewer:ENSMUSP00000101837.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106230Re-query CCDS DB by Protein ID:ENSMUSP00000101837
Original member Current member EBI ENSMUST00000106232.7 ENSMUSP00000101839.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106232.7Link to Ensembl Protein Viewer:ENSMUSP00000101839.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106232Re-query CCDS DB by Protein ID:ENSMUSP00000101839
Original member NCBI NM_001277216.2 NP_001264145.1 Updated not alive Link to Nucleotide Sequence:NM_001277216.2Link to Protein Sequence:NP_001264145.1Re-query CCDS DB by Nucleotide ID:NM_001277216Re-query CCDS DB by Protein ID:NP_001264145
Current member NCBI NM_001277216.3 NP_001264145.1 Accepted alive Link to Nucleotide Sequence:NM_001277216.3Link to Protein Sequence:NP_001264145.1Re-query CCDS DB by Nucleotide ID:NM_001277216Re-query CCDS DB by Protein ID:NP_001264145Link to BLAST:NP_001264145.1
Original member NCBI NM_001277217.2 NP_001264146.1 Updated not alive Link to Nucleotide Sequence:NM_001277217.2Link to Protein Sequence:NP_001264146.1Re-query CCDS DB by Nucleotide ID:NM_001277217Re-query CCDS DB by Protein ID:NP_001264146
Current member NCBI NM_001277217.3 NP_001264146.1 Accepted alive Link to Nucleotide Sequence:NM_001277217.3Link to Protein Sequence:NP_001264146.1Re-query CCDS DB by Nucleotide ID:NM_001277217Re-query CCDS DB by Protein ID:NP_001264146Link to BLAST:NP_001264146.1
Original member NCBI NM_001277218.1 NP_001264147.1 Updated not alive Link to Nucleotide Sequence:NM_001277218.1Link to Protein Sequence:NP_001264147.1Re-query CCDS DB by Nucleotide ID:NM_001277218Re-query CCDS DB by Protein ID:NP_001264147
Current member NCBI NM_001277218.2 NP_001264147.1 Accepted alive Link to Nucleotide Sequence:NM_001277218.2Link to Protein Sequence:NP_001264147.1Re-query CCDS DB by Nucleotide ID:NM_001277218Re-query CCDS DB by Protein ID:NP_001264147Link to BLAST:NP_001264147.1
Original member NCBI NM_001355043.1 NP_001341972.1 Updated not alive Link to Nucleotide Sequence:NM_001355043.1Link to Protein Sequence:NP_001341972.1Re-query CCDS DB by Nucleotide ID:NM_001355043Re-query CCDS DB by Protein ID:NP_001341972
Current member NCBI NM_001355043.2 NP_001341972.1 Accepted alive Link to Nucleotide Sequence:NM_001355043.2Link to Protein Sequence:NP_001341972.1Re-query CCDS DB by Nucleotide ID:NM_001355043Re-query CCDS DB by Protein ID:NP_001341972Link to BLAST:NP_001341972.1
Original member NCBI NM_007560.4 NP_031586.1 Updated not alive Link to Nucleotide Sequence:NM_007560.4Link to Protein Sequence:NP_031586.1Re-query CCDS DB by Nucleotide ID:NM_007560Re-query CCDS DB by Protein ID:NP_031586
Current member NCBI NM_007560.5 NP_031586.1 Accepted alive Link to Nucleotide Sequence:NM_007560.5Link to Protein Sequence:NP_031586.1Re-query CCDS DB by Nucleotide ID:NM_007560Re-query CCDS DB by Protein ID:NP_031586Link to BLAST:NP_031586.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264145.1 502 P36898 502 100% 0 0
NP_001264146.1 502 P36898 502 100% 0 0
NP_001264147.1 502 P36898 502 100% 0 0
NP_001341972.1 502 P36898 502 100% 0 0
NP_031586.1 502 P36898 502 100% 0 0

Chromosomal Locations for CCDS 17874.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 141840615 141840740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141842885 141843015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141845077 141845252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141856349 141856646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141857404 141857596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141862983 141863121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141864481 141864577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141870722 141870824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141871303 141871405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141880357 141880499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGCTCTTACGAAGCTCTGGAAAATTAAATGTGGGCACCAAGAAGGAGGATGGAGAGAGTACAGCCCCCA
CCCCTCGGCCCAAGATCCTACGTTGTAAATGCCACCACCACTGTCCGGAAGACTCAGTCAACAATATCTG
CAGCACAGATGGGTACTGCTTCACGATGATAGAAGAAGATGACTCTGGAATGCCTGTTGTCACCTCTGGA
TGTCTAGGACTAGAAGGGTCAGATTTTCAATGTCGTGACACTCCCATTCCTCATCAAAGAAGATCAATTG
AATGCTGCACAGAAAGGAATGAGTGTAATAAAGACCTCCACCCCACTCTGCCTCCTCTCAAGGACAGAGA
TTTTGTTGATGGGCCCATACACCACAAGGCCTTGCTTATCTCTGTGACTGTCTGTAGTTTACTCTTGGTC
CTCATTATTTTATTCTGTTACTTCAGGTATAAAAGACAAGAAGCCCGACCTCGGTACAGCATTGGGCTGG
AGCAGGACGAGACATACATTCCTCCTGGAGAGTCCCTGAGAGACTTGATCGAGCAGTCTCAGAGCTCGGG
AAGTGGATCAGGCCTCCCTCTGCTGGTCCAAAGGACAATAGCTAAGCAAATTCAGATGGTGAAGCAGATT
GGAAAAGGCCGCTATGGCGAGGTGTGGATGGGAAAGTGGCGTGGAGAAAAGGTGGCTGTGAAAGTGTTCT
TCACCACGGAGGAAGCCAGCTGGTTCCGAGAGACTGAGATATATCAGACGGTCCTGATGCGGCATGAGAA
TATTCTGGGGTTCATTGCTGCAGATATCAAAGGGACTGGGTCCTGGACTCAGTTGTACCTCATCACAGAC
TATCATGAAAACGGCTCCCTTTATGACTATCTGAAATCCACCACCTTAGACGCAAAGTCCATGCTGAAGC
TAGCCTACTCCTCTGTCAGCGGCCTATGCCATTTACACACGGAAATCTTTAGCACTCAAGGCAAGCCAGC
AATCGCCCATCGAGACTTGAAAAGTAAAAACATCCTGGTGAAGAAAAATGGAACTTGCTGCATAGCAGAC
CTGGGCTTGGCTGTCAAGTTCATTAGTGACACAAATGAGGTTGACATCCCACCCAACACCCGGGTTGGCA
CCAAGCGCTATATGCCTCCAGAAGTGCTGGACGAGAGCTTGAATAGAAACCATTTCCAGTCCTACATTAT
GGCTGACATGTACAGCTTTGGACTCATCCTCTGGGAGATTGCAAGGAGATGTGTTTCTGGAGGTATAGTG
GAAGAATACCAGCTTCCCTATCACGACCTGGTGCCCAGTGACCCTTCTTATGAGGACATGAGAGAAATTG
TGTGCATGAAGAAGTTACGGCCTTCATTCCCCAATCGATGGAGCAGTGATGAGTGTCTCAGGCAGATGGG
GAAGCTTATGACAGAGTGCTGGGCGCAGAATCCTGCCTCCAGGCTGACGGCCCTGAGAGTTAAGAAAACC
CTTGCCAAAATGTCAGAGTCCCAGGACATTAAACTCTGA

Translation (502 aa):
MLLRSSGKLNVGTKKEDGESTAPTPRPKILRCKCHHHCPEDSVNNICSTDGYCFTMIEEDDSGMPVVTSG
CLGLEGSDFQCRDTPIPHQRRSIECCTERNECNKDLHPTLPPLKDRDFVDGPIHHKALLISVTVCSLLLV
LIILFCYFRYKRQEARPRYSIGLEQDETYIPPGESLRDLIEQSQSSGSGSGLPLLVQRTIAKQIQMVKQI
GKGRYGEVWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITD
YHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIAD
LGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEIARRCVSGGIV
EEYQLPYHDLVPSDPSYEDMREIVCMKKLRPSFPNRWSSDECLRQMGKLMTECWAQNPASRLTALRVKKT
LAKMSESQDIKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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