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Report for CCDS16359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16359.1 Public Mus musculus 2 Or4c109 23 108 98 CCDS HistoryNCBI Gene:258899Re-query CCDS DB by CCDS ID:16359.1Re-query CCDS DB by GeneID:258899See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16359.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099804.1 ENSMUSP00000097392.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099804.1Link to Ensembl Protein Viewer:ENSMUSP00000097392.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099804Re-query CCDS DB by Protein ID:ENSMUSP00000097392
Original member Current member EBI ENSMUST00000216026.1 ENSMUSP00000149049.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216026.1Link to Ensembl Protein Viewer:ENSMUSP00000149049.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216026Re-query CCDS DB by Protein ID:ENSMUSP00000149049
Original member Current member EBI ENSMUST00000217469.1 ENSMUSP00000150322.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217469.1Link to Ensembl Protein Viewer:ENSMUSP00000150322.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217469Re-query CCDS DB by Protein ID:ENSMUSP00000150322
Original member Current member NCBI NM_146897.2 NP_667108.2 Accepted alive Link to Nucleotide Sequence:NM_146897.2Link to Protein Sequence:NP_667108.2Re-query CCDS DB by Nucleotide ID:NM_146897Re-query CCDS DB by Protein ID:NP_667108Link to BLAST:NP_667108.2

Chromosomal Locations for CCDS 16359.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88987265 88988200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGCATAACCAGAGCTATGTCAATGAGTTCATACTCCTGGGACTTTCACAAAACCCACAAATTGTGAAAA
TATCATTTGTTATATTTTTATTGGTTTACCTTGCAACTCTTGTGGGCAACATGATAATTGTGGTGACCAT
TGTCTACAGTCCTGCACTACTGGGCTCCCCCATGTACTTCTTCTTGGCATTCCTGTCCTTCCTGGATGCT
TGTGTCTCCTCTGTTGTCACACCTAAGATGATTGTGGACATGACTTATGAGAGGAAGATTATCTCTTTTG
AATGTTGTATGACACAGGTCTTTGCTGTGCACTTTCTTACTGCTGTAGAGGTCATTGTCCTCGCAGCCAT
GGCCTATGACCGCTATGTGGCTATTTGCAAGCCCTTGCACTACTCTTTCATCATGAATCGGAGGCTCTGT
GGCACTCTGGTTGGGGTAGCCTGGGCTGGAGGATTCTTGCATTCTATCATACAAATTGCCTTTATTTTAA
AATTGCCCTTCTGTGGACCCAATGTTATTGATCATTTCATATGTGACTTGTTTCCATTGCTGAAGCTTGC
CTGCACTGATATACACATTTTTATCATTTTGGTGTTTGCTAACAGTGGGTCTATCTGCATAATTATATTC
TCCTTTTTGCTCATTTCCTATGGTGTTATATTGTTCTCTCTGAGAGCCCACAGCTCAGAAGGGCGCCGTA
AGGCTCTTTCTACCTGTGGATCCCATATTACTGTTGTAGTTTTTTTCTTTGTTTCCTGTATATTAATATA
TGCACGGCCCACATCTGCATTTTCCTTTGAGAAAAATGTTTTTGTGTTTACAGATGTCTTGACACCACTG
CTTAATCCTATGGTTTACACTTTCAGGAATAAGGAAATGATAAATGCCATCAGGAAAATGAGGAAGAGAC
TTATAATGGTTCCTGATAAATATTAA

Translation (311 aa):
MHNQSYVNEFILLGLSQNPQIVKISFVIFLLVYLATLVGNMIIVVTIVYSPALLGSPMYFFLAFLSFLDA
CVSSVVTPKMIVDMTYERKIISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSFIMNRRLC
GTLVGVAWAGGFLHSIIQIAFILKLPFCGPNVIDHFICDLFPLLKLACTDIHIFIILVFANSGSICIIIF
SFLLISYGVILFSLRAHSSEGRRKALSTCGSHITVVVFFFVSCILIYARPTSAFSFEKNVFVFTDVLTPL
LNPMVYTFRNKEMINAIRKMRKRLIMVPDKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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