NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22283.1 Public Mus musculus 8 Cfap96 23 108 98 CCDS HistoryNCBI Gene:69479Re-query CCDS DB by CCDS ID:22283.1Re-query CCDS DB by GeneID:69479See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22283.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095323.7 ENSMUSP00000092961.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095323.7Link to Ensembl Protein Viewer:ENSMUSP00000092961.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095323Re-query CCDS DB by Protein ID:ENSMUSP00000092961
Original member Current member EBI ENSMUST00000098786.2 ENSMUSP00000096383.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098786.2Link to Ensembl Protein Viewer:ENSMUSP00000096383.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098786Re-query CCDS DB by Protein ID:ENSMUSP00000096383
Original member Current member NCBI NM_001033148.3 NP_001028320.1 Accepted alive Link to Nucleotide Sequence:NM_001033148.3Link to Protein Sequence:NP_001028320.1Re-query CCDS DB by Nucleotide ID:NM_001033148Re-query CCDS DB by Protein ID:NP_001028320Link to BLAST:NP_001028320.1
Original member Current member NCBI NM_001359113.1 NP_001346042.1 Accepted alive Link to Nucleotide Sequence:NM_001359113.1Link to Protein Sequence:NP_001346042.1Re-query CCDS DB by Nucleotide ID:NM_001359113Re-query CCDS DB by Protein ID:NP_001346042Link to BLAST:NP_001346042.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028320.1 316 Q3U1D9 316 100% 0 0
NP_001346042.1 316 Q3U1D9 316 100% 0 0

Chromosomal Locations for CCDS 22283.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 45953746 45953812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45956397 45956566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45962254 45962433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45967856 45967931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45968027 45968164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45970354 45970573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45973504 45973603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGCCGATAGAAGGTGGGAAAACAGATATGGAGAGGATTGGCCTCTTCAGTGAGATGGAATACATCACTG
TGGGCGACAAATATGTGTCACCATTTAATCGACCCTTTAATGAGGCTGCAAGCAAAAATAGACAGATCCT
ACCGGGGGGAACCAAAGAAATGTCCAGTCTCCAGGCAGGATACTTTGATTCCCAGTTTGCAAGGATTTTT
GAAGGGGAAGGCTACGTGAATTTGAATCAAGTGAGGAGACGGTATATGCTGGCAGAATCCAAAAAGAACC
TAGGCAAAGCTTTCATCCCTAGTAGCGGAGAGAAAAAGCCAAGTGGATTAGGAAGCTATTATGGAACAAT
TGGTGGTCCTGTCCCATTCTTCAGTGCTCAGATAAAACCCAAGGACAAGTATCAGCCACCGGGGAAGAAT
TTATATACCAACCCAGGAAAAAAAGGAACTGGATATGGCTATGCCAATGTTACCATAGGCAAGCAGCTTT
CACATTCTTCTGACTTATATGACGCAGCGAGACAGAGTTATAAGAAAGAAAGTGAAGAGCACCATCGACT
AATCAAAGGGTCACCTTTCAAGCTGCATCTTCACCCGAAGGACTATTTTGATACTAACCCTTACTTTTTA
GAGCACCATTTACCTCCCCTTAGGAGAGAAGAAAAGAAGGAAGTGTCTTTCAAGCCCTTTAAGCCCTCCT
CTCCTGGTAAAAAGGCTGGTGGAATGAAAGCAGGGGCATTTGACCCTTACCCAGCACACTCAGCGGACCC
TTACGTGGTCAAAGTGGAAAAGGCGATTCCTTCGAAAGGTGAAAGGGTTTTCCACCCACCCAATGGACCA
AAAAGCAGACCCGTTGAAAGTATAATGGCGCTGAATGTCAAAAGGGCATTAAACGTGAAGAACTACAAGA
ATGCCTCCTCAACCACTCTGGGAAAGCAGTTAGTCTTCTAG

Translation (316 aa):
MPIEGGKTDMERIGLFSEMEYITVGDKYVSPFNRPFNEAASKNRQILPGGTKEMSSLQAGYFDSQFARIF
EGEGYVNLNQVRRRYMLAESKKNLGKAFIPSSGEKKPSGLGSYYGTIGGPVPFFSAQIKPKDKYQPPGKN
LYTNPGKKGTGYGYANVTIGKQLSHSSDLYDAARQSYKKESEEHHRLIKGSPFKLHLHPKDYFDTNPYFL
EHHLPPLRREEKKEVSFKPFKPSSPGKKAGGMKAGAFDPYPAHSADPYVVKVEKAIPSKGERVFHPPNGP
KSRPVESIMALNVKRALNVKNYKNASSTTLGKQLVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH