NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18147.1 Public Mus musculus 4 Foxe1 23 108 98 CCDS HistoryNCBI Gene:110805Re-query CCDS DB by CCDS ID:18147.1Re-query CCDS DB by GeneID:110805See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18147.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095097.2 ENSMUSP00000092715.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095097.2Link to Ensembl Protein Viewer:ENSMUSP00000092715.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095097Re-query CCDS DB by Protein ID:ENSMUSP00000092715
Original member Current member NCBI NM_183298.2 NP_899121.1 Accepted alive Link to Nucleotide Sequence:NM_183298.2Link to Protein Sequence:NP_899121.1Re-query CCDS DB by Nucleotide ID:NM_183298Re-query CCDS DB by Protein ID:NP_899121Link to BLAST:NP_899121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899121.1 371 Q8R2I0 371 100% 0 0

Chromosomal Locations for CCDS 18147.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 46344194 46345309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGACGGCCGAGAGCGCGCCGCCTCCCCCGCCGCAGCCCGAGACGCTGGCGGCCGTGAAGGAAGAGCGCG
GTGAGGCGGCGGCGGCGGGCGCGGGGGTCCCGGCGGAGGCTGCGGGTCGCGGCGCGGGAGGACGGCGACG
CAAGCGCCCCCTGCAGCGGGGGAAGCCGCCCTACAGCTACATCGCGCTCATCGCTATGGCCATCGCGCAC
GCGCCCGAGCGCCGCCTGACTCTGGGCGGCATCTACAAGTTCATCACCGAGCGCTTCCCGTTCTACCGCG
ACAACCCCAAGAAGTGGCAGAACAGCATCCGCCACAACCTCACCCTCAACGACTGCTTCCTCAAGATCCC
GCGCGAGGCGGGCCGCCCGGGCAAGGGCAATTACTGGGCGCTCGACCCCAACGCCGAGGACATGTTCGAA
AGCGGCAGCTTCCTGCGCCGCCGCAAGCGCTTCAAGCGCTCGGACCTGTCCACCTACCCGGCCTACATGC
ACGATGCAGCCGCTGCCGCCGCCGCTGCCGCTGCCGCCATCTTCCCGGGCGCCGTGCCTGCCGCAAGGCC
GGCTTACCCGGGCGCCGTCTATGCGGGCTACGCGCCGCCACTCGCCGCGCCTCCGCCGGTCTACTACCCC
GCCGCGTCGCCGGGGCCCTGCCGGGTCTTCGGCTTGGTTCCCGAGCGGCCGCTCAGCCCCGATCTGGGCC
CCGCGCCGTCAGCGGCCGGCGGCTCGTGCGCCTTCGCGGCTGCGGCGGGCGCGGCGGGCACCGGGAGCTT
CCAGCCGGCGGTGTGCACCGGAGCGCGGCCGGTCAACCCCGCCGCCTATGCCGCCGCCTACGCGGGCCCC
GACGGCGCGTACCCGCAAGGAGCGAGCAGTGCGCTCTTCGCCGCTGCTGCGGGCCGCCTGGCCGGACCGG
CCTCGCCCCCCGCGGGAGGCGGCAGCGGCGGCGTGGAGGCCACGGTGGACTTCTACGGGCGCACGTCGCC
GGGCCAGTTCGGAGCGGCGCTGGGACCCTGCTACAATCCCGGTGGGCAACTCGGAGCCGGTGGTGGCGGT
GCCTACCACTCCCGCCACGCCACCGCCTACCCCGGCGCGGTGGATCGGTTCGTGTCTGCCATGTGA

Translation (371 aa):
MTAESAPPPPPQPETLAAVKEERGEAAAAGAGVPAEAAGRGAGGRRRKRPLQRGKPPYSYIALIAMAIAH
APERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCFLKIPREAGRPGKGNYWALDPNAEDMFE
SGSFLRRRKRFKRSDLSTYPAYMHDAAAAAAAAAAAIFPGAVPAARPAYPGAVYAGYAPPLAAPPPVYYP
AASPGPCRVFGLVPERPLSPDLGPAPSAAGGSCAFAAAAGAAGTGSFQPAVCTGARPVNPAAYAAAYAGP
DGAYPQGASSALFAAAAGRLAGPASPPAGGGSGGVEATVDFYGRTSPGQFGAALGPCYNPGGQLGAGGGG
AYHSRHATAYPGAVDRFVSAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH