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Report for CCDS38372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38372.1 Public Mus musculus 2 Fam217b 23 108 98 CCDS HistoryNCBI Gene:71532Re-query CCDS DB by CCDS ID:38372.1Re-query CCDS DB by GeneID:71532See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094251.10 ENSMUSP00000091805.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094251.10Link to Ensembl Protein Viewer:ENSMUSP00000091805.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094251Re-query CCDS DB by Protein ID:ENSMUSP00000091805
Original member NCBI NM_001081289.1 NP_001074758.1 Updated not alive Link to Nucleotide Sequence:NM_001081289.1Link to Protein Sequence:NP_001074758.1Re-query CCDS DB by Nucleotide ID:NM_001081289Re-query CCDS DB by Protein ID:NP_001074758
Current member NCBI NM_001081289.2 NP_001074758.1 Accepted alive Link to Nucleotide Sequence:NM_001081289.2Link to Protein Sequence:NP_001074758.1Re-query CCDS DB by Nucleotide ID:NM_001081289Re-query CCDS DB by Protein ID:NP_001074758Link to BLAST:NP_001074758.1

Chromosomal Locations for CCDS 38372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 178417566 178417591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178420271 178421408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGAGGGACTGTCATCAGAAAAGCAGTATAAATGCTGGCTCATCTTGGAATCAAGTACAGCATTCAAAGA
CTACTTCGGGGAAAAGGCAGAGTGGATCACAAGGACCCCACGTCTCCTCCCAGCTGAGGAGCAGCCTCCT
TGGGATCTCCCAGCCAGCAGCAGAGAAACTCATGGAAACCGTTCCCACGGAAGGAATACAGGAGCAGGCT
GCGCTCAGCTCCAGGTATCAGGCTGCCTCTGGAAGCAAGCTGTTCCTTGACTTCCACTCCATGGAGATCA
TGAAGGGTGCTGATGAGGACAGTGCCAGTGACCTGTCAGACTCAGAAAGAGTGGCCATCCCCCCTTCTCC
ATTCACGCCTCCAGAGCTCAACCTCAGAGCCGAAGAGATAGACCCGGTTTCCTTCAGTCTTCACCCAGAG
CTGAGCCAGGCAGAGTCCAGACAAACCTACCCTGACTTTCTTCCACCTCCTTTTAACTCCTGGGACCTCC
GGGATATGGCTGTTGTCATGAACTCAGAGTGCAGGAGTGAGGCCCTGCCTCGGGCCACGGGATTCCTTGG
GAAGTACATAGACAGACTTCTTCAACTAGAATGGCTGCAAGTCCAGACTGTGCAGTGTGAGAAGGCCCGA
GCCGCCAAGGCCAAGCCCCCTGGTGCCTCTGGGGTGCTGAAAAGCCCTGGACGGGGTAAGCTCCTTACCA
GTGCCCTGTCCAAACCCTTACCATCCCCAGAAGGGATTTCAAAGTCAGGCCCTTCTCGAAAGAAAGGTTT
TCGCCACGAAGAAGCCCACCCATCCTACTATGCATTTGAGACTTTGCCTAACTCTGTGGATGGGCCTGGC
CGACCCAGGCTGTGTTCCCAGAAGCAAGCCCCGGAACTGAGAATGGAGAAGAAGAAGAAATCAAGTAAGG
GCCCTAAGCTTCAGCCCCGTGCTCCACCCTGCGCCGAGGGCAACCCTGCAATGGAAGCCAACGGCAACAT
CCGAATCCCCAGGCAGTCTGCAGTGCTTCTGGACCCAGTGGATTCCCATAGGGCCTCCAGGACACAGGCG
CACGTGGACCTGAAGAAAAAGGGAAGTGCAAATACCTGTGGCTATGCCCCTTCATCCAGTGAGAAAAAAC
TCAAAACAAATGGAGCCAAGCAAAGCACATATAAGTTAAAGTGA

Translation (387 aa):
MRDCHQKSSINAGSSWNQVQHSKTTSGKRQSGSQGPHVSSQLRSSLLGISQPAAEKLMETVPTEGIQEQA
ALSSRYQAASGSKLFLDFHSMEIMKGADEDSASDLSDSERVAIPPSPFTPPELNLRAEEIDPVSFSLHPE
LSQAESRQTYPDFLPPPFNSWDLRDMAVVMNSECRSEALPRATGFLGKYIDRLLQLEWLQVQTVQCEKAR
AAKAKPPGASGVLKSPGRGKLLTSALSKPLPSPEGISKSGPSRKKGFRHEEAHPSYYAFETLPNSVDGPG
RPRLCSQKQAPELRMEKKKKSSKGPKLQPRAPPCAEGNPAMEANGNIRIPRQSAVLLDPVDSHRASRTQA
HVDLKKKGSANTCGYAPSSSEKKLKTNGAKQSTYKLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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