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Report for CCDS29615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29615.1 Public Mus musculus 19 Or10v9 23 108 98 CCDS HistoryNCBI Gene:258227Re-query CCDS DB by CCDS ID:29615.1Re-query CCDS DB by GeneID:258227See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29615.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079875.3 ENSMUSP00000078800.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079875.3Link to Ensembl Protein Viewer:ENSMUSP00000078800.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079875Re-query CCDS DB by Protein ID:ENSMUSP00000078800
Original member Current member EBI ENSMUST00000214796.1 ENSMUSP00000150146.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214796.1Link to Ensembl Protein Viewer:ENSMUSP00000150146.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214796Re-query CCDS DB by Protein ID:ENSMUSP00000150146
Original member Current member NCBI NM_001011524.1 NP_001011524.1 Accepted alive Link to Nucleotide Sequence:NM_001011524.1Link to Protein Sequence:NP_001011524.1Re-query CCDS DB by Nucleotide ID:NM_001011524Re-query CCDS DB by Protein ID:NP_001011524Link to BLAST:NP_001011524.1

Chromosomal Locations for CCDS 29615.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11854995 11855951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGAGGAAGGAAATCAGACTGGGATGGTCCTCTTCCACTTCCGCCCCTTCTCCAAACTCCCTGAGGTGC
AGATGCTGATCTTTGTGCTTTTCCTCATGATGTACCTGGTCAGCATCGGGGGAAACATGTCCATCGTCCT
CACCATCTGGACCAATCGGTGTCTCCACACCCCTATGTACTTCTTCCTGGCCAACCTGGCTAGCCTGGAG
ATCTTCTATTCTTCTACCATAGCCCCCCTGACTCTGGCCAGCATCCTGTCCACAGAGAGGACTGTGGTTT
CCTTGGCAGGCTGTGGTGCCCAGATGTTCTTCTTCATCTTCCTGGGCAGTGCTGACTGTATTCTGCTGGC
TGTCATGGCCTATGACCGGTTTGTGGCCATCTGTCACCCTCTGCGATATACCCTCATCATGAGCTGGCAC
TTGTGTGTCCAGTTGGCCCTGGGGTCCCTGTTGCTGGGTTTCATCTTGGCCATGCAGTTGACTGTGCTCA
TCTTCCAATTGCCTTTCTGTAGCAGTAAGGAAATCAGCTTGTTCTACTGTGATGTCCTCCCTGTCATGAG
ACTGGCATGTGCAGACACCCATGTCCATGAGGCCACTCTGTTTGTAGTCAGTGTCATCGTCCTCACCATC
CCTTTCCTCCTCATCACTCTCTCCTATGTCTTCATTGTGGATGCCATCCTGAAGATCCGCTCAGCTGAGG
GGAGGCACAAAGCCTTCTCTACCTGTTCTTCCCACCTGACGGTTGTCCTCCTGCAGTATGGATGCACAAG
TCTCATCTACTTGTGTCCCAGCTCCAGCTACTCTCCTGAGAGGGGCCAGGTAGTATCTGTGGTTTACACC
TTCATCACCCCTGTGCTGAATCCTTTGATCTACAGCATGAGGAACAGAGAACTCAAGGATGCTTTGAGGA
GAGTGATAATGAAATTGGTTCTGATCCAAACACAAGAAGCACTCTAG

Translation (318 aa):
MEEGNQTGMVLFHFRPFSKLPEVQMLIFVLFLMMYLVSIGGNMSIVLTIWTNRCLHTPMYFFLANLASLE
IFYSSTIAPLTLASILSTERTVVSLAGCGAQMFFFIFLGSADCILLAVMAYDRFVAICHPLRYTLIMSWH
LCVQLALGSLLLGFILAMQLTVLIFQLPFCSSKEISLFYCDVLPVMRLACADTHVHEATLFVVSVIVLTI
PFLLITLSYVFIVDAILKIRSAEGRHKAFSTCSSHLTVVLLQYGCTSLIYLCPSSSYSPERGQVVSVVYT
FITPVLNPLIYSMRNRELKDALRRVIMKLVLIQTQEAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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