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Report for CCDS26006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26006.1 Public Mus musculus 12 Pigh 23 108 98 CCDS HistoryNCBI Gene:110417Re-query CCDS DB by CCDS ID:26006.1Re-query CCDS DB by GeneID:110417See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26006.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072154.8 ENSMUSP00000072018.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072154.8Link to Ensembl Protein Viewer:ENSMUSP00000072018.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000072154Re-query CCDS DB by Protein ID:ENSMUSP00000072018
Original member NCBI NM_029988.2 NP_084264.1 Updated not alive Link to Nucleotide Sequence:NM_029988.2Link to Protein Sequence:NP_084264.1Re-query CCDS DB by Nucleotide ID:NM_029988Re-query CCDS DB by Protein ID:NP_084264
Current member NCBI NM_029988.3 NP_084264.1 Accepted alive Link to Nucleotide Sequence:NM_029988.3Link to Protein Sequence:NP_084264.1Re-query CCDS DB by Nucleotide ID:NM_029988Re-query CCDS DB by Protein ID:NP_084264Link to BLAST:NP_084264.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084264.1 188 Q5M9N4 188 100% 0 0

Chromosomal Locations for CCDS 26006.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 79082404 79082496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79083616 79083699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79085647 79085856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79089440 79089619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGAGGACGAGAAGAGCTTCTCCGATATCTGCGGCGGCCGCCTAGCCCTGCGGTGCCGCTACTACTCAC
CGTACTGCCGCGAGTTCGGCCTCAGCTCGGCTCGGCTGTCGCTGTGCTCGCTCACCGCGGTCACCTGCGC
GGTGTGGCTGGCGGCCTACGGGCTCTTCACCCTGTGCGAGAATAGCATGGTCCTCTCTGCCACCATCTTC
ATCACCATCTTAGGCCTGCTTGGTTACCTCCATTTTGTGAAGATTGACCAGGAGACTCTACTAATCATCG
ACTCACTTGGCATCCAGATGACTTCATCTTATGCATCGGGCAAAGAAAGTACCACCTTCATAGAGATGGA
CAAGGTCAAGGACATTATCATTAACGAGGCTATCTACATGCAGAAGGTCATTTACTACCTCTGCATTTTA
CTGAAGGAGCCGGGGAAGCCACACGAGATCTCTCGAGTAGTTCCTGTCTTCCAGAGTGCCAAGCCCCGGT
TGGACTGCTTGATTGAAGTATACAGAAGCTGCCAGGAGGTTCTGGCACACCAGAAAGCCACAGCAACAAG
CTTATGA

Translation (188 aa):
MEDEKSFSDICGGRLALRCRYYSPYCREFGLSSARLSLCSLTAVTCAVWLAAYGLFTLCENSMVLSATIF
ITILGLLGYLHFVKIDQETLLIIDSLGIQMTSSYASGKESTTFIEMDKVKDIIINEAIYMQKVIYYLCIL
LKEPGKPHEISRVVPVFQSAKPRLDCLIEVYRSCQEVLAHQKATATSL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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