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Report for CCDS39364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39364.1 Public Mus musculus 5 Slc29a4 23 108 98 CCDS HistoryNCBI Gene:243328Re-query CCDS DB by CCDS ID:39364.1Re-query CCDS DB by GeneID:243328See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39364.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058418.7 ENSMUSP00000059896.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058418.7Link to Ensembl Protein Viewer:ENSMUSP00000059896.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058418Re-query CCDS DB by Protein ID:ENSMUSP00000059896
Original member NCBI NM_146257.2 NP_666369.1 Updated not alive Link to Nucleotide Sequence:NM_146257.2Link to Protein Sequence:NP_666369.1Re-query CCDS DB by Nucleotide ID:NM_146257Re-query CCDS DB by Protein ID:NP_666369
Current member NCBI NM_146257.3 NP_666369.1 Accepted alive Link to Nucleotide Sequence:NM_146257.3Link to Protein Sequence:NP_666369.1Re-query CCDS DB by Nucleotide ID:NM_146257Re-query CCDS DB by Protein ID:NP_666369Link to BLAST:NP_666369.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666369.1 528 Q8R139 528 100% 0 0

Chromosomal Locations for CCDS 39364.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 142705367 142705535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142711963 142712094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142712887 142713000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142714011 142714139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142715046 142715120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142717592 142717836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142718457 142718598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142718711 142718898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142719957 142720197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142721339 142721490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGGCTCTATCGGAAGCCAGCGCCTCAAGGAGCCCTGCGTGGCAGCCACATCTGACCAGAGTGTGGTGA
CAAGCTTTAGCTTTGACAACTTCCAGCTGGAGACGACAGCAGAGGGGGCTCAGGATCCAGGCATCAGAGT
CAGGGGTGTCCCCACTTTCACAGACTCTGCGGTAGAGGAGCCTGTGCCAGATGACCGCTACCATGCCATC
TACTTTGCCATGCTGCTGGCTGGCGTGGGCTTCCTACTGCCATACAACAGCTTTATCACCGATGTCGACT
ATCTTCACCACAAGTACCCAGGGACCTCCATCGTATTTGACATGAGCCTCACCTATATCCTGGTGGCATT
GGCGGCTGTGCTCCTAAACAACGTTGTGGTGGAGAGGTTGAACCTGCACACCAGGATCACCACAGGCTAC
CTCCTCGCCTTGGGTCCCTTGCTCTTTATCAGCATATGCGATGTGTGGCTGCAGCTCTTCTCTCACGACC
AGGCTTACGCCATCAACCTGGCCGCCGTGGGCACTGTGGCCTTTGGTTGCACAGTGCAGCAATCTAGCTT
CTATGGCTACACGGGATTACTGCCCAAGAGGTACACGCAGGGTGTGATGACTGGAGAGAGCACGGCAGGG
GTGATGATCTCTCTGAGTCGAATCCTCACTAAGCTGCTGCTCCCGGACGAGCGGGCCAGCACCATCATCT
TCTTCCTGGTGTCTGCCGGCTTGGAGCTCCTGTGCTTCCTGCTGCATCTGCTGGTGCGGCGCAGCCGTTT
TGTGCTCTACTATACCACTCGGCCCCGTGACAGCCGCCCCGTCCAGGCAGGCTACCGAGTGCACCACGAT
GTCGCATCCGGAGACATCCACTTTGAGCACCAAACTCCAGCCCTATCCAGCAGCAGGTCCCCGAAGGAGA
GCCCGGCCCATGAGGTGACGCACAGCAACAGTGGGGTCTACATGCGTTTTGATGTGCCCCGGCCACGAGT
CAAACGAAGCTGGCCCACCTTCAGAGCCCTGCTGTTGCACCGATACGTCGTGGCGCGGGTCATCTGGGCC
GACATGCTGTCCATTGCGGTAACCTACTTCATTACACTGTGCCTGTTTCCGGGCCTGGAGTCCGAGATCC
GCCACTGCGTGCTGGGGGAGTGGCTGCCCATCCTGGTGATGGCCGTGTTCAACCTGTCAGACTTTGTGGG
CAAGATCCTGGCAGCCCTGCCCGTGGAGTGGCGGGGCACTCACCTGCTCGCCTGCTCTTGCCTGCGTGTG
GTCTTCATCCCCCTCTTCATCCTGTGTGTGTACCCCAGTGGCATGCCTGCCCTCCGCCACCCTGCCTGGC
CCTGTGTCTTCTCGCTGCTAATGGGCATCAGCAATGGCTACTTTGGCAGTGTGCCCATGATCCTGGCAGC
TGGAAAAGTGAGCCCCAAGCAGCGGGAACTGGCAGGAAACACCATGACTGTGTCCTACATGTCGGGGCTG
ACCCTGGGCTCTGCTGTGGCCTACTGCACCTACAGCCTCACCCGAGATGCCCACGGCAGCTGCTTTCAAA
CAGCCACCGCCGCCGCCGCCAACGACTCCATCCCTGTCGGTCCCTGA

Translation (528 aa):
MGSIGSQRLKEPCVAATSDQSVVTSFSFDNFQLETTAEGAQDPGIRVRGVPTFTDSAVEEPVPDDRYHAI
YFAMLLAGVGFLLPYNSFITDVDYLHHKYPGTSIVFDMSLTYILVALAAVLLNNVVVERLNLHTRITTGY
LLALGPLLFISICDVWLQLFSHDQAYAINLAAVGTVAFGCTVQQSSFYGYTGLLPKRYTQGVMTGESTAG
VMISLSRILTKLLLPDERASTIIFFLVSAGLELLCFLLHLLVRRSRFVLYYTTRPRDSRPVQAGYRVHHD
VASGDIHFEHQTPALSSSRSPKESPAHEVTHSNSGVYMRFDVPRPRVKRSWPTFRALLLHRYVVARVIWA
DMLSIAVTYFITLCLFPGLESEIRHCVLGEWLPILVMAVFNLSDFVGKILAALPVEWRGTHLLACSCLRV
VFIPLFILCVYPSGMPALRHPAWPCVFSLLMGISNGYFGSVPMILAAGKVSPKQRELAGNTMTVSYMSGL
TLGSAVAYCTYSLTRDAHGSCFQTATAAAANDSIPVGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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