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Report for CCDS17649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17649.1 Public Mus musculus 3 Pdzk1 23 108 98 CCDS HistoryNCBI Gene:59020Re-query CCDS DB by CCDS ID:17649.1Re-query CCDS DB by GeneID:59020See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17649.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058865.13 ENSMUSP00000058936.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058865.13Link to Ensembl Protein Viewer:ENSMUSP00000058936.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058865Re-query CCDS DB by Protein ID:ENSMUSP00000058936
Original member Current member EBI ENSMUST00000107069.7 ENSMUSP00000102684.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107069.7Link to Ensembl Protein Viewer:ENSMUSP00000102684.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107069Re-query CCDS DB by Protein ID:ENSMUSP00000102684
Original member Current member EBI ENSMUST00000107070.7 ENSMUSP00000102685.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107070.7Link to Ensembl Protein Viewer:ENSMUSP00000102685.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107070Re-query CCDS DB by Protein ID:ENSMUSP00000102685
Original member Current member EBI ENSMUST00000153256.2 ENSMUSP00000118846.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153256.2Link to Ensembl Protein Viewer:ENSMUSP00000118846.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153256Re-query CCDS DB by Protein ID:ENSMUSP00000118846
Original member Current member NCBI NM_001146001.2 NP_001139473.1 Accepted alive Link to Nucleotide Sequence:NM_001146001.2Link to Protein Sequence:NP_001139473.1Re-query CCDS DB by Nucleotide ID:NM_001146001Re-query CCDS DB by Protein ID:NP_001139473Link to BLAST:NP_001139473.1
Original member Current member NCBI NM_001355710.1 NP_001342639.1 Accepted alive Link to Nucleotide Sequence:NM_001355710.1Link to Protein Sequence:NP_001342639.1Re-query CCDS DB by Nucleotide ID:NM_001355710Re-query CCDS DB by Protein ID:NP_001342639Link to BLAST:NP_001342639.1
Original member Current member NCBI NM_021517.3 NP_067492.2 Accepted alive Link to Nucleotide Sequence:NM_021517.3Link to Protein Sequence:NP_067492.2Re-query CCDS DB by Nucleotide ID:NM_021517Re-query CCDS DB by Protein ID:NP_067492Link to BLAST:NP_067492.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139473.1 519 Q9JIL4 519 99.8073% 0 1
NP_001342639.1 519 Q9JIL4 519 99.8073% 0 1
NP_067492.2 519 Q9JIL4 519 99.8073% 0 1

Chromosomal Locations for CCDS 17649.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96850230 96850439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96851491 96851740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96854534 96854670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96855855 96856050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96857195 96857391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96868308 96868532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96868941 96869231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96870110 96870163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGCCTCCACCTTCAACCCCAGAGAGTGTAAATTGTCCAAACAAGAGGGGCAGAACTATGGCTTCTTTC
TCCGAATTGAGAAGGACACTGATGGTCACCTGATCCGGGTGATTGAGGAGGGGAGCCCAGCAGAGAAGGC
GGGGCTCCTGGACGGTGACAGGGTGCTCAGGATCAATGGTGTCTTTGTCGACAAGGAGGAGCATGCGCAG
GTGGTGGAGCTGGTCAGAAAGAGTGGGAATTCAGTGACTCTGCTGGTCCTGGATGGAGACTCCTATGAGA
AGGCTGTGAAAAATCAGGTGGATTTGAAAGAGCTGGATCAAAGCCAGAGGGAGGCCGCTCTGAATGATAA
GAAACCGGGCCCTGGGATGAACGGAGCGGTGGAGCCGTGTGCCCAGCCACGGCTCTGCTACCTGGTGAAG
GAGGGCAACAGCTTTGGCTTCTCTCTGAAAACTATCCAAGGTAAAAAGGGTGTGTACTTGACTAATATAA
TGCCTCAGGGCGTGGCCATGAAAGCTGGTGTTCTGGCTGATGATCACTTGATTGAAGTGAATGGAGAAAA
TGTAGAGAACGCCAGCCATGAGGAAGTGGTTGAAAAGGTGACAAAGTCAGGAAGCCGTATCATGTTCCTC
CTTGTGGACAAAGAAACTGCCAGGTGCCATAGTGAACAGAAGACACAATTCAAGAGGGAGACAGCCAGTT
TGAAACTGCTGCCCCACCAGCCCCGGGTGGTAGTGATCAAGAAGGGCAGCAATGGCTATGGCTTCTATCT
GAGGGCGGGGCCTGAACAGAAAGGTCAAATCATTAAGGACATAGAACCCGGGAGCCCAGCAGAGGCAGCT
GGCTTGAAGAACAATGACTTGGTAGTTGCTGTCAATGGCAAGTCTGTGGAAGCTCTTGATCATGACGGTG
TGGTGGAAATGATTAGAAAAGGTGGAGACCAGACTACTCTGTTGGTGCTGGACAAAGAGGCAGAGAGCAT
CTATAGCCTGGCTCGGTTCTCTCCACTTCTTTACTGCCAAAGTCAAGAACTGCCTAATGGTTCTGTCAAG
GAAGGCCCAGCTCCGATCCCTGCTCCTCTGGAGGCCACAGGCTCAGAGCCCACAGAGGACGCGGAGGGTC
ACAAGCCCAAGCTCTGCAGGCTGCTTAAAGAGGACGATAGCTACGGCTTTCACCTGAATGCCATTCGGGG
TCAGCCTGGCTCCTTTGTCAAAGAGGTACAGCAGGGTGGCCCTGCTGACAAGGCTGGGCTGGAGAATGAG
GACGTCATCATCGAAGTGAACGGGGAGAACGTGCAAGAGGAACCCTACGACAGAGTGGTGGAGAGAATCA
AGAGCAGCGGGAAGCACGTCACTCTGTTGGTCTGTGGAAAGATGGCCTACAGCTACTTCCAAGCTAAGAA
AATCCCCATCGTTTCCTCCATGGCCGAGCCCCTGGTGGCTGGCCCTGATGAAAAAGGAGAGACGTCTGCG
GAGTCCGAGCATGACGCCCACCCAGCAAAAGACCGAACTCTCAGCACAGCCTCGCACTCTTCGTCTAACT
CTGAAGACACGGAGATGTGA

Translation (519 aa):
MASTFNPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQ
VVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELDQSQREAALNDKKPGPGMNGAVEPCAQPRLCYLVK
EGNSFGFSLKTIQGKKGVYLTNIMPQGVAMKAGVLADDHLIEVNGENVENASHEEVVEKVTKSGSRIMFL
LVDKETARCHSEQKTQFKRETASLKLLPHQPRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAA
GLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESIYSLARFSPLLYCQSQELPNGSVK
EGPAPIPAPLEATGSEPTEDAEGHKPKLCRLLKEDDSYGFHLNAIRGQPGSFVKEVQQGGPADKAGLENE
DVIIEVNGENVQEEPYDRVVERIKSSGKHVTLLVCGKMAYSYFQAKKIPIVSSMAEPLVAGPDEKGETSA
ESEHDAHPAKDRTLSTASHSSSNSEDTEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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