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Report for CCDS21557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21557.1 Public Mus musculus 7 Or51g1 23 108 98 CCDS HistoryNCBI Gene:259119Re-query CCDS DB by CCDS ID:21557.1Re-query CCDS DB by GeneID:259119See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21557.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056235.1 ENSMUSP00000058167.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056235.1Link to Ensembl Protein Viewer:ENSMUSP00000058167.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000056235Re-query CCDS DB by Protein ID:ENSMUSP00000058167
Original member Current member EBI ENSMUST00000215606.1 ENSMUSP00000149209.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215606.1Link to Ensembl Protein Viewer:ENSMUSP00000149209.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215606Re-query CCDS DB by Protein ID:ENSMUSP00000149209
Original member Current member NCBI NM_147115.1 NP_667326.1 Accepted alive Link to Nucleotide Sequence:NM_147115.1Link to Protein Sequence:NP_667326.1Re-query CCDS DB by Nucleotide ID:NM_147115Re-query CCDS DB by Protein ID:NP_667326Link to BLAST:NP_667326.1

Chromosomal Locations for CCDS 21557.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102984221 102985162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGCCATCCTTTACAACAGCAGCCTCCAAAAAGCCACTTTCTTCCTGACAGGCTTTCAAGGTCTGGAAG
AATTCCATGGCTGGATCTCCATTCCCTTCTGCTCCATCTACTTAATAGTCATTTTAGGAAACCTCACTAT
TCTCCATGTCATCCGGACTGATGCCACTCTCCATGAACCTATGTACTATTTCTTGGCTATGCTGGCCCTC
ACAGACTTGGGACTCTGCCTCTCCACACTGCCCACTGTGCTGGGAATCTTCTGGTTTGATGCCAGAGAGA
TTGGTATTCCTGCCTGCTTTACTCAGCTATTCTTCATCCACACCTTGTCTTTAGTGGAGTCATCGGTTCT
ACTGTCTATGTCCTTCGACCGCTATGTAGCAATTTGCAACCCACTGCGTTATTCTACCATCCTGACGCCC
AGAAGGATTGTGAAGATGGGGCTGAGCTCAGTACTCAGAAGTGCACTCCTCATTCTCCCATTACCTTTCC
TCCTTAAACGCTTCCATTATTGCCGATCCCACGTGTTAGCCCATGCCTATTGTCTACATCTGGAGATCAT
GAAACTAGCCTGCTCCAGCATCATTGTCAATCATATCTATGGGCTCTTTGTTGTGGCCTGCACTGTGGGT
GTAGACTCCCTGCTTATATTCCTCTCATACACCCTCATCCTCCATGCTGTACTAGGCAAAGCCTCCCGTC
AGGAGCGCCTCCGTGCTCTCAATACCTGTATCTCTCATATCTGTGCAGTACTGCTTTTCTACATCCCCAT
GATTGGCTTATCCCTTGTGCATCGCTTTGGTGAGCACCTTCCCCGCATTGTACATCTTCTGATGTCATAT
GTGTATCTATTAGTACCACCCCTCATGAACCCCATTGTCTACAGCATCAAGACCAAGCAAATACGACAGC
GTATCATCAAGAAGTTTGAGTTTATAAAGTAA

Translation (313 aa):
MAILYNSSLQKATFFLTGFQGLEEFHGWISIPFCSIYLIVILGNLTILHVIRTDATLHEPMYYFLAMLAL
TDLGLCLSTLPTVLGIFWFDAREIGIPACFTQLFFIHTLSLVESSVLLSMSFDRYVAICNPLRYSTILTP
RRIVKMGLSSVLRSALLILPLPFLLKRFHYCRSHVLAHAYCLHLEIMKLACSSIIVNHIYGLFVVACTVG
VDSLLIFLSYTLILHAVLGKASRQERLRALNTCISHICAVLLFYIPMIGLSLVHRFGEHLPRIVHLLMSY
VYLLVPPLMNPIVYSIKTKQIRQRIIKKFEFIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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