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Report for CCDS28859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28859.1 Public Mus musculus 17 A530064D06Rik 23 108 98 CCDS HistoryNCBI Gene:328830Re-query CCDS DB by CCDS ID:28859.1Re-query CCDS DB by GeneID:328830See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28859.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053612.13 ENSMUSP00000055935.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053612.13Link to Ensembl Protein Viewer:ENSMUSP00000055935.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053612Re-query CCDS DB by Protein ID:ENSMUSP00000055935
Original member Current member NCBI NM_178796.6 NP_848911.2 Accepted alive Link to Nucleotide Sequence:NM_178796.6Link to Protein Sequence:NP_848911.2Re-query CCDS DB by Nucleotide ID:NM_178796Re-query CCDS DB by Protein ID:NP_848911Link to BLAST:NP_848911.2

Chromosomal Locations for CCDS 28859.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48152837 48152972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48163258 48163441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48166378 48166689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48166931 48166988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGCCTGGGAGCCCACATACCTGCTCTCCCCAGTGCTGCTGCTGCTCCTGGCCTCAGGCTCCTGGACAC
AGAACCCGGAGTTACTTCGAACACAGGAGGGTGAGACTGTTTCTGTGACATGCTGGTATGATTCGCTCTA
CCACTCCAGCGAGAAGATCTGGTGTAAGCAAATAGACAACTTGTGTTACCCCTTCGTCAGCAAAAGTGCC
GAGAAGCCAAGATTCCTCATCCAGCAGTCTTCTCGCTTCAACTTCTTCACTGTCACCATGACTAAGCTCA
AGATGAGTGACTCGGGCATCTATCACTGTGGGATTGTTGCAAATAACACGTCAGTTTATCTCAGAAATAT
CCACCTGGTGGTGTCAAAAGGTTCTTCAGTTGTGTCCACTCCTGACATCATTCCTGCTACAAGGCTAACT
AAGCTTCCTACCCTTATTACCACAAAACACTCACCCAGTGACACAACTACAACCCGATCTCTACCCCAGC
CCACCACTGTTGTTTCCTCTCCTGATCCTAGAGTCATCATCATAAATGGGACAGATGCTGACAGGGGCTT
TGTATCCAGTGTTACTATTCCCGTGGTCTGTGGACTCCTCAGCAAGACACTGGTATTCACGGTCTTATTC
ATTGTCACACAGAAGTCATTTGGACGACAGGCCATGAAGGCACACAACAGTAACTCCTGA

Translation (229 aa):
MAWEPTYLLSPVLLLLLASGSWTQNPELLRTQEGETVSVTCWYDSLYHSSEKIWCKQIDNLCYPFVSKSA
EKPRFLIQQSSRFNFFTVTMTKLKMSDSGIYHCGIVANNTSVYLRNIHLVVSKGSSVVSTPDIIPATRLT
KLPTLITTKHSPSDTTTTRSLPQPTTVVSSPDPRVIIINGTDADRGFVSSVTIPVVCGLLSKTLVFTVLF
IVTQKSFGRQAMKAHNSNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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