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Report for CCDS38177.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38177.2 Public Mus musculus 2 Agbl2 23 108 98 CCDS HistoryNCBI Gene:271813Re-query CCDS DB by CCDS ID:38177.2Re-query CCDS DB by GeneID:271813See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 38177.1
The coding region has been updated to represent a longer and distinct C-terminus that is more supported by available transcript and homology data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 38177.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037219.11 ENSMUSP00000048647.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037219.11Link to Ensembl Protein Viewer:ENSMUSP00000048647.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037219Re-query CCDS DB by Protein ID:ENSMUSP00000048647
Original member Current member EBI ENSMUST00000111481.1 ENSMUSP00000107106.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111481.1Link to Ensembl Protein Viewer:ENSMUSP00000107106.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111481Re-query CCDS DB by Protein ID:ENSMUSP00000107106
Original member Current member EBI ENSMUST00000170320.7 ENSMUSP00000129216.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170320.7Link to Ensembl Protein Viewer:ENSMUSP00000129216.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170320Re-query CCDS DB by Protein ID:ENSMUSP00000129216
Original member Current member NCBI NM_178755.4 NP_848870.2 Accepted alive Link to Nucleotide Sequence:NM_178755.4Link to Protein Sequence:NP_848870.2Re-query CCDS DB by Nucleotide ID:NM_178755Re-query CCDS DB by Protein ID:NP_848870Link to BLAST:NP_848870.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848870.2 862 Q8CDK2-1 862 100% 0 0

Chromosomal Locations for CCDS 38177.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 90784026 90784125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90788933 90789067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90789779 90789832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90791460 90791645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90793873 90793980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90797436 90797589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90801037 90801819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90803042 90803198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90805799 90805925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90807299 90807399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90807978 90808108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90809948 90810017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90810641 90810763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90811257 90811364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90813275 90813352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90815340 90815513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2589 nt):
ATGAATGTCCTGCTTGAGATGGCTTTTCTTTCACAGACTCTTCCTGATCCCTATGAGGACTTTATTCACC
ATCACCTCCAGTATTATGGATATTTCAAAGCTCAGAAAAGCAGCCTGCCAAACTCAGGCACTCATCAGCG
CGTTTGGAGGAACAGCCCTCGGTACATGTTGAATGGCTCTTTTGGAGAAAGAGATGATTTCATCTCGGAC
AGTTTGGAAAAAGAGATGCTTCTGTGGCCTACCTGTTTATCTTCAACTGGGCATGCTCACATAGACGCTG
TAAACAGAGACTCACTTCTGCTGAGCTCGCCGCTCCTGAGGACCAGGCAGCTGATTTTTGATGAGCTAGA
TGAAGCAAGCCCACGGCTTCGAGAACCCCGAGAACTCTTCTCATGTTTCTCTAGCAGAGGGCCGCTGCAG
GCTCCAAGATGGCCAATCGAATGTGAGGTCATCAAGGAAAACATTCATCACATTGAGTGGGTTCCACATC
AACCAGAATATTTCTACCAACCTACAGGAAGCGAGAAGGTGCCAGAGATTGTGGGAGAGGAGCAAGGTAC
AGTTGTGTACCAGCTAGATTCAGTGCCTGCAGAAGGCACCTATTTCACTAGTTCCAGAATAGGAGGCAAA
CGAGGGACCATCAAGGAACTTGCTGTCACACTGCAAGGGCCGGACGACAATACTCTATTGTTTGAGTCAA
GGTTTGAGAGCGGGAATCTGCAGAAAGCCGTCAGAGTAGGTATCTATGAGTACGAGCTCACCTTGCGGAC
TGACCTCTACACGGACAAACACACTCAGTGGTTTTACTTCAGAGTTCAGAACACCAGAAAAGACGCTACC
TATCGCTTCACCATCGTCAACTTGCTGAAACCCAAGAGCCTTTACGCAGTAGGCATGAAGCCTCTCATGT
ACTCTCAGCTGGATGCCACCATCTACAACATCGGCTGGAGGAGAGAGGGCCGTGAAATCAAGTACTACAA
GAACAATGTGGACGACGGCCAGCAGCCCTTATACTGCCTCACCTGGACCACTCAGTTTCCTCACGACCAG
GACACTTGCTTCTTCGCACACTTTTACCCATACACTTATACTGACTTGCAATGCTATCTCTTGTCAGTAG
CAAACAACCCCATCCAGTCTCAGTTCTGCAAGCTCCGAGCCCTATGCAGGAGCCTAGCAGGGAACACTGT
CTACCTGCTGACCATCACCAACCCATCCAGGACCCCTCAAGAGGCAGCCGCAAAGAAAGCTGTGGTCTTG
AGCGCCCGAGTCCACCCTGGAGAGAGTAACAGCTCCTGGATCATGAACGGCTTTTTGGACTTCATCCTTA
GCAACTCTCCCGATGCCCAGCTCCTCAGGGATATCTTTGTCTTCAAGGTGATTCCCATGTTAAACCCAGA
TGGCGTGATAGTGGGGAACTATCGGTGTTCGCTGGCTGGAAGGGACTTGAACAGGCATTATAAAACCGTT
CTTAAGGACTCCTTCCCTTGCATTTGGTACACCAAGAACATGATCAAAAGGCTTCTGGAAGAAAGAGAGG
TTCTCTTGTACTGTGATTTCCATGGGCATAGCCGCAAGAACAACATCTTCCTGTATGGCTGTCACAGCAA
CAACCGCAAGCACTGGCTCCATGAGCGTGTCTTTCCTTTAATGTTGAGCAAGAATGCACCAGACAAGTTC
TCTTTCGACAGCTGTAACTTTAAGGTCCAAAAATGCAAAGAAGGAACGGGAAGAGTGGTGATGTGGCGGA
TGGGCATCATCAACAGCTACACCATGGAGTCTACCTTTGGCGGGTCTACCCTGGGTAGTAAAAGAGACAC
TCACTTTACCATTGAGGACCTGAAGTCCCTAGGGTATCATGTCTGTGACACTCTTCTGGATTTCTGTGAT
CCTGACCAAACCAAGTACACACAGTGTCTACAAGAGCTTAAGGAGCTCCTACAACAGGAAATCAACAAAA
AGTTGAATAACTTTGGACAAGATATGGATTTAGAAGGAAACTGGAGTGACATTCCTTTGTCTGACATTGA
ATCCAGCACGAGTGGCTCGGACAGCTCCCTCTCCGATGGCCCTCCCATTCGTCTACTGAACATCGTTGCA
GATGAGCCAAATCAGAAGACGGTGTTAAAGAATCCAAAAAAGAAGAGACTTCAGACTAGAAAACAGCGGA
ATGAGCAGTACCAGAAGAGCTACTTGATGCGGGAGTTAAAGTTAACAGAAAACGCCCCAGGAAGGGCGAG
ATTTGTCTCTACTCTGCAAAAGCAGCCTACTTTTTTGAAAAGTCCAGAGAGTCCTAGCCCTTCAGTAAGG
AGAAGTGAAAACCCAAGGCTCAATGAGACACAGTTAAGTGGAAGAGAGAAGGGCACCTCCCTGGATCCAC
CACTGACCAGCCCTAAGAATAAAGAAAGAATTCAGAGTAAGAAGCCAGGCTTTACAGCATCATGCTCTCC
AAAGAGAAGCACAAACTCCAGCCTAGGGCCAGCTCCAGATGTGAAGCCAAACTGGTCTAAGACTAGATAC
TCTGCCACAAGGAAGGACCATGCCACCATGGCCGTGTACCCATCCTTGCATATATACACATACCCATAA

Translation (862 aa):
MNVLLEMAFLSQTLPDPYEDFIHHHLQYYGYFKAQKSSLPNSGTHQRVWRNSPRYMLNGSFGERDDFISD
SLEKEMLLWPTCLSSTGHAHIDAVNRDSLLLSSPLLRTRQLIFDELDEASPRLREPRELFSCFSSRGPLQ
APRWPIECEVIKENIHHIEWVPHQPEYFYQPTGSEKVPEIVGEEQGTVVYQLDSVPAEGTYFTSSRIGGK
RGTIKELAVTLQGPDDNTLLFESRFESGNLQKAVRVGIYEYELTLRTDLYTDKHTQWFYFRVQNTRKDAT
YRFTIVNLLKPKSLYAVGMKPLMYSQLDATIYNIGWRREGREIKYYKNNVDDGQQPLYCLTWTTQFPHDQ
DTCFFAHFYPYTYTDLQCYLLSVANNPIQSQFCKLRALCRSLAGNTVYLLTITNPSRTPQEAAAKKAVVL
SARVHPGESNSSWIMNGFLDFILSNSPDAQLLRDIFVFKVIPMLNPDGVIVGNYRCSLAGRDLNRHYKTV
LKDSFPCIWYTKNMIKRLLEEREVLLYCDFHGHSRKNNIFLYGCHSNNRKHWLHERVFPLMLSKNAPDKF
SFDSCNFKVQKCKEGTGRVVMWRMGIINSYTMESTFGGSTLGSKRDTHFTIEDLKSLGYHVCDTLLDFCD
PDQTKYTQCLQELKELLQQEINKKLNNFGQDMDLEGNWSDIPLSDIESSTSGSDSSLSDGPPIRLLNIVA
DEPNQKTVLKNPKKKRLQTRKQRNEQYQKSYLMRELKLTENAPGRARFVSTLQKQPTFLKSPESPSPSVR
RSENPRLNETQLSGREKGTSLDPPLTSPKNKERIQSKKPGFTASCSPKRSTNSSLGPAPDVKPNWSKTRY
SATRKDHATMAVYPSLHIYTYP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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