NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28121.1 Public Mus musculus 16 Slc51a 23 108 98 CCDS HistoryNCBI Gene:106407Re-query CCDS DB by CCDS ID:28121.1Re-query CCDS DB by GeneID:106407See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042042.8 ENSMUSP00000046286.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042042.8Link to Ensembl Protein Viewer:ENSMUSP00000046286.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042042Re-query CCDS DB by Protein ID:ENSMUSP00000046286
Original member Current member NCBI NM_145932.3 NP_666044.1 Accepted alive Link to Nucleotide Sequence:NM_145932.3Link to Protein Sequence:NP_666044.1Re-query CCDS DB by Nucleotide ID:NM_145932Re-query CCDS DB by Protein ID:NP_666044Link to BLAST:NP_666044.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666044.1 340 Q8R000 340 100% 0 0

Chromosomal Locations for CCDS 28121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32475742 32475878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32476373 32476478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32477167 32477313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32477548 32477659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32478305 32478463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32478716 32478789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32479650 32479804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32486135 32486229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32487485 32487522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGAGCCAGGCAGGACTCATATCAAACTTGACCCCAGGTACACAGCAGAGCTTCTGGAACTTCTGGAGA
CCAATTACAGCATCTCCCCTGCCTGCTTCTCTCACCCTCCCACCGCAGCCCAGCTCCTGAGAGCACTGGG
CCCAGTGGACATAGCCCTCACCATCATCTTGACCTTTCTTACCACTGGCTCAGTTGCCATTTTTCTGGAG
GATGCTGTTTACCTATACAAGAACACCCTTTGCCCCATCAAGAAGAGGACTCTGATCTGGAGTAGCTCTG
CACCCACGGTGGTATCTGTGTTCTGCTGCTTTGGTCTCTGGATTCCTCGCGCCCTCACACTTGTAGAAAT
GGCCATAACCTCGTTTTATGCCGTATGCTTTTACCTGCTGATGATGGTCATGGTGGAAGGCTTTGGTGGG
AAGAAAGCAGTACTGAGGACACTGAAGGACACCCCGATGAGGGTGCACACGGGTCCCTGTTGCTGCTGCT
GTCCCTGCTGCCCACCTCTCATACTTACCAGAAAGAAGCTGCAGCTGCTCCTGCTGGGCCCTTTCCAGTA
CGCCTTCTTCAAGATAACGCTGAGCATAGTGGGCCTGTTCCTCATCCCTGACGGCATCTATGACCCAGGA
GAAATTTCTGAGAAGAGCGCAGCTCTCTGGATCAACAATCTCCTTGCTGTGTCTACCCTTCTGGCCCTCT
GGTCCCTGGCCATCCTTTTCCGTCAAGCCAAGATGCATCTGGGTGAACAGAACATGGGATCCAAGTTTGC
TCTGTTCCAGGTGCTTGTCATCCTGACCGCCCTGCAGCCTGCCATTTTCTCCATCTTGGCTAACAGTGGG
CAGATCGCTTGCTCACCTCCCTACTCTTCTAAAATCAGGTCTCAAGTGATGAACTGCCACATGCTCATAC
TGGAGACCTTCCTGATGACAGTGCTGACACGAATGTACTATCGAAGGAAAGACGACAAGGTTGGGTATGA
GGCTTGTTCGCTGCCAGACCTGGACTCAGCACTCAAAGCCTGA

Translation (340 aa):
MEPGRTHIKLDPRYTAELLELLETNYSISPACFSHPPTAAQLLRALGPVDIALTIILTFLTTGSVAIFLE
DAVYLYKNTLCPIKKRTLIWSSSAPTVVSVFCCFGLWIPRALTLVEMAITSFYAVCFYLLMMVMVEGFGG
KKAVLRTLKDTPMRVHTGPCCCCCPCCPPLILTRKKLQLLLLGPFQYAFFKITLSIVGLFLIPDGIYDPG
EISEKSAALWINNLLAVSTLLALWSLAILFRQAKMHLGEQNMGSKFALFQVLVILTALQPAIFSILANSG
QIACSPPYSSKIRSQVMNCHMLILETFLMTVLTRMYYRRKDDKVGYEACSLPDLDSALKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH