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Report for CCDS35664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35664.1 Public Mus musculus 1 Traf3ip1 23 108 98 CCDS HistoryNCBI Gene:74019Re-query CCDS DB by CCDS ID:35664.1Re-query CCDS DB by GeneID:74019See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047242.8 ENSMUSP00000042391.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047242.8Link to Ensembl Protein Viewer:ENSMUSP00000042391.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047242Re-query CCDS DB by Protein ID:ENSMUSP00000042391
Original member Current member NCBI NM_028718.2 NP_082994.1 Accepted alive Link to Nucleotide Sequence:NM_028718.2Link to Protein Sequence:NP_082994.1Re-query CCDS DB by Nucleotide ID:NM_028718Re-query CCDS DB by Protein ID:NP_082994Link to BLAST:NP_082994.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082994.1 625 Q149C2 625 100% 0 0

Chromosomal Locations for CCDS 35664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 91494766 91494888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91497953 91498021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91499502 91499663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91500773 91500910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91501005 91501424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91505423 91505494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91507493 91507568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91518294 91518314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91519578 91519662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91520056 91520139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91520884 91521007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91521187 91521223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91522831 91522907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91525879 91526102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91527618 91527783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGAACGCCGCAGTGGTGCGGCGGACGCAGGAGGCTCTGGGCAAGGTGATCCGGAGGCCGCCGCTCACCG
AGAAGCTGCTCAACAAGCCACCGTTCCGCTACCTGCACGACATCATCACCGAGGTGATTAGGATAACTGG
CTTCATGAAGGGCCTCTACACAGATGCTGAGATGAAGTCAGAAAATGTCAAGGATAAAGATGCAAAAATT
AGCTTCTTACAGAAGGCCATAGATGTGGTCATGATGGTGTCAGGTGAACCCTTGGCAGCAAAACCAGCTA
GAATTGTGGCCGGGCACGAACCTGAAAGAACCAATGAGCTGCTTCAATTGATTGGCAAGTGCTGCCTCAG
CAAGCTCTCCAGTGATGAGGCAGTGAAGAGAGTCTTAGCTGGGGACAAGGGGGACTCGAGAGGGCGGGCC
CAGCGGACGTCGAAAGCACAAGAGCCCAACAACAAGAGTGGGAAGGAGGAAGAGTCCAGAATACACAAAG
AGGATAAACGAAGCTCTGAGGCCAAGGAGAGAAGCGCAAGTGCAGAGCACAAACAGAAGGAGGAACTGAA
GGAAGACAGCAAGCCTCGGGAGAAGGAGAGGGACAAGGAGAAGGCCAAGGAGGCCGACAGAGACCGGCAC
AGAGACCCCGACAGGGACAGAAACAGAGACGGAGAGCGAGAGAAAGCCCGAGCACGGGCCAAGGACAGGG
ACAGAAACAACAGAGACCGGGACAGAGAGGCAGAAAGGGACAGGGAGAGGGACAGGAGGAGCGAGGGCGG
GAAAGAAAAAGAGAGGGTGAAGGACCGAGACCGAGACCGTGACAAGGGAAGAGACCGGGAACGGCGGAAA
TCGAAGAATGGAGAACATACCCGGGATCCTGACAGGGAGAAAAGCAGAGATGCAGACAAGCCAGAGAAAA
AGTCCTCAAGCTCAGGGGAGATATCTAGAAAGCTGTCAGATGGATCTTTCAAAGATGTCAAAGCAGAGAT
GGAGGCTGACATTTCTGTGGGAGCATCTAGGTCCTCGACGTTAAAACCATCAAAACGGCGATCGAAGCAT
TCACTGGAAGGTGACTCCCCCAGCGATGCAGAAGTAGAAGCTGGACCTGCTGGCCAAGATAAGCCGGAGG
TGATGGAGAATGCGGAAGTTCCCAGTGAGCTTCCCTCCAGCCTCAGAAGAATACCTCGGCCTGGGAGTGC
ACGGCCAGCACCTCCCAGGGTCAAACGACAAGAGAGCACAGAGACACTGGTGGTAGACAGGTCGGGAAGT
GGTAAAACCGTCTCCAGTGTGATCATCGACTCCCAGAACTCTGACAATGAGGATGACGAGCAGTTTGTGG
TGGAGGCTGCCCCTCAGCTGTCAGAAATCGCAGACATTGACATGGTGCCGTCAGGGGAGCTGGAGGATGA
GGAGAAGCACGGTGGGCTCGTGAAGAAGATCTTGGAGACGAAGAAGGATTATGAGAAATTGCAGCAGTCT
CTCAAGCCTGGTGAGAAGGAGAGATCACTCATCTTTGAGTCAGCATGGAAGAAGGAGAAAGACATCGTTT
CCAAGGAGATAGAGAAGCTCCGCGTGTCCATCCAGACCCTGTGTAAGAGTGCGCTTCCCCTGGGAAAGAT
CATGGACTACATCCAGGAGGACGTGGACGCCATGCAGAATGAGCTGCAGCTGTGGCACAGTGAGAACAGG
CAGCATGCCGAAGCCCTGAGCCAGGAGCAGAGTATCACAGACAGTGCGGTGGAGCCCCTGAAGGCCGAGC
TTTCTGAGCTGGAGCAACAGATCAGAGACCAGCAGGACAAGATCTGTGCTGTGAAGGCCAACATCCTGAA
GAATGAGGAGAAGATCCAGAAAATGGTGCACAGTATCAACCTGTCGTCACGAAGGTGA

Translation (625 aa):
MNAAVVRRTQEALGKVIRRPPLTEKLLNKPPFRYLHDIITEVIRITGFMKGLYTDAEMKSENVKDKDAKI
SFLQKAIDVVMMVSGEPLAAKPARIVAGHEPERTNELLQLIGKCCLSKLSSDEAVKRVLAGDKGDSRGRA
QRTSKAQEPNNKSGKEEESRIHKEDKRSSEAKERSASAEHKQKEELKEDSKPREKERDKEKAKEADRDRH
RDPDRDRNRDGEREKARARAKDRDRNNRDRDREAERDRERDRRSEGGKEKERVKDRDRDRDKGRDRERRK
SKNGEHTRDPDREKSRDADKPEKKSSSSGEISRKLSDGSFKDVKAEMEADISVGASRSSTLKPSKRRSKH
SLEGDSPSDAEVEAGPAGQDKPEVMENAEVPSELPSSLRRIPRPGSARPAPPRVKRQESTETLVVDRSGS
GKTVSSVIIDSQNSDNEDDEQFVVEAAPQLSEIADIDMVPSGELEDEEKHGGLVKKILETKKDYEKLQQS
LKPGEKERSLIFESAWKKEKDIVSKEIEKLRVSIQTLCKSALPLGKIMDYIQEDVDAMQNELQLWHSENR
QHAEALSQEQSITDSAVEPLKAELSELEQQIRDQQDKICAVKANILKNEEKIQKMVHSINLSSRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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