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Report for CCDS22379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22379.1 Public Mus musculus 8 Rab3a 23 108 98 CCDS HistoryNCBI Gene:19339Re-query CCDS DB by CCDS ID:22379.1Re-query CCDS DB by GeneID:19339See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034301.11 ENSMUSP00000034301.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034301.11Link to Ensembl Protein Viewer:ENSMUSP00000034301.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034301Re-query CCDS DB by Protein ID:ENSMUSP00000034301
Original member Current member EBI ENSMUST00000110090.7 ENSMUSP00000105717.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110090.7Link to Ensembl Protein Viewer:ENSMUSP00000105717.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110090Re-query CCDS DB by Protein ID:ENSMUSP00000105717
Original member Current member EBI ENSMUST00000110092.3 ENSMUSP00000105719.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110092.3Link to Ensembl Protein Viewer:ENSMUSP00000105719.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110092Re-query CCDS DB by Protein ID:ENSMUSP00000105719
Original member Current member EBI ENSMUST00000110093.8 ENSMUSP00000105720.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110093.8Link to Ensembl Protein Viewer:ENSMUSP00000105720.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110093Re-query CCDS DB by Protein ID:ENSMUSP00000105720
Original member NCBI NM_001166399.2 NP_001159871.1 Updated not alive Link to Nucleotide Sequence:NM_001166399.2Link to Protein Sequence:NP_001159871.1Re-query CCDS DB by Nucleotide ID:NM_001166399Re-query CCDS DB by Protein ID:NP_001159871
Current member NCBI NM_001166399.3 NP_001159871.1 Accepted alive Link to Nucleotide Sequence:NM_001166399.3Link to Protein Sequence:NP_001159871.1Re-query CCDS DB by Nucleotide ID:NM_001166399Re-query CCDS DB by Protein ID:NP_001159871Link to BLAST:NP_001159871.1
Original member NCBI NM_001328047.1 NP_001314976.1 Updated not alive Link to Nucleotide Sequence:NM_001328047.1Link to Protein Sequence:NP_001314976.1Re-query CCDS DB by Nucleotide ID:NM_001328047Re-query CCDS DB by Protein ID:NP_001314976
Current member NCBI NM_001328047.2 NP_001314976.1 Accepted alive Link to Nucleotide Sequence:NM_001328047.2Link to Protein Sequence:NP_001314976.1Re-query CCDS DB by Nucleotide ID:NM_001328047Re-query CCDS DB by Protein ID:NP_001314976Link to BLAST:NP_001314976.1
Original member NCBI NM_009001.6 NP_033027.1 Updated not alive Link to Nucleotide Sequence:NM_009001.6Link to Protein Sequence:NP_033027.1Re-query CCDS DB by Nucleotide ID:NM_009001Re-query CCDS DB by Protein ID:NP_033027
Current member NCBI NM_009001.7 NP_033027.1 Accepted alive Link to Nucleotide Sequence:NM_009001.7Link to Protein Sequence:NP_033027.1Re-query CCDS DB by Nucleotide ID:NM_009001Re-query CCDS DB by Protein ID:NP_033027Link to BLAST:NP_033027.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159871.1 220 P63011 220 100% 0 0
NP_001314976.1 220 P63011 220 100% 0 0
NP_033027.1 220 P63011 220 100% 0 0

Chromosomal Locations for CCDS 22379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70755856 70756083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70756447 70756565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70757138 70757262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70757898 70758088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGGCTTCCGCCACAGACTCTCGCTATGGGCAGAAGGAGTCCTCAGACCAGAACTTCGACTATATGTTCA
AGATCCTGATCATTGGGAACAGCAGCGTGGGCAAAACCTCGTTCCTCTTCCGCTACGCAGATGACTCCTT
CACTCCAGCCTTTGTCAGCACCGTTGGCATAGACTTCAAGGTCAAAACCATCTACCGCAACGACAAGAGG
ATCAAGCTGCAGATCTGGGACACAGCAGGGCAAGAGCGGTACCGCACCATCACCACAGCCTATTACCGAG
GCGCCATGGGCTTCATCCTAATGTATGACATCACCAATGAGGAGTCATTTAATGCAGTGCAGGACTGGTC
CACTCAGATCAAAACTTACTCGTGGGACAATGCCCAGGTGCTGCTGGTGGGAAACAAGTGTGACATGGAA
GATGAGCGAGTGGTGTCCTCAGAGCGTGGCCGGCAGCTGGCTGACCACCTGGGCTTTGAGTTCTTTGAGG
CCAGCGCCAAGGACAACATTAATGTCAAGCAGACGTTTGAACGTCTGGTGGACGTGATCTGTGAGAAGAT
GTCAGAGTCCCTGGATACTGCAGACCCTGCGGTCACCGGTGCCAAGCAGGGCCCGCAGCTCACCGACCAG
CAGGCGCCACCTCATCAGGATTGTGCCTGCTGA

Translation (220 aa):
MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR
IKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME
DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQ
QAPPHQDCAC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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