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Report for CCDS20053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20053.1 Public Mus musculus 6 Trpv5 23 108 98 CCDS HistoryNCBI Gene:194352Re-query CCDS DB by CCDS ID:20053.1Re-query CCDS DB by GeneID:194352See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20053.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031901.10 ENSMUSP00000031901.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031901.10Link to Ensembl Protein Viewer:ENSMUSP00000031901.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031901Re-query CCDS DB by Protein ID:ENSMUSP00000031901
Original member Current member NCBI NM_001007572.2 NP_001007573.1 Accepted alive Link to Nucleotide Sequence:NM_001007572.2Link to Protein Sequence:NP_001007573.1Re-query CCDS DB by Nucleotide ID:NM_001007572Re-query CCDS DB by Protein ID:NP_001007573Link to BLAST:NP_001007573.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007573.1 723 P69744 723 100% 0 0

Chromosomal Locations for CCDS 20053.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41653130 41653427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41654820 41654926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41657774 41658042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41659660 41659726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41659879 41660044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41660286 41660362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41660458 41660544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41670777 41670989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41674223 41674369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41674502 41674674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41674912 41675010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41675281 41675418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41675907 41676029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41676125 41676222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41680546 41680655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGGGGGCTAAAACTCCTTGGATCCAACTTCAGAAACTTCTCAATTGGTGGGTCAGAGACCAAGACTGGA
ACCAGCACGTGGATCAGCTACATATGCTACAGCAAAAAAGTATTTGGGAGTCTCCACTGCTTAGAGCAGC
CAAGGAAAATGATATGTGCACACTTAAGAAACTTCAGCATGACCAGAACTGTGACTTCCGGCAAAGAGGA
GCTCTGGGAGAGACAGCACTGCATGTAGCTGCCCTCTATGATAACCTGGATGCTGCTATAATGCTGATGG
AGGCTGCTCCATACTTGGTCACAGAGTCCACACTGTGTGAGCCATTTGTAGGTCAGACTGCACTGCACAT
CGCAGTCATGAACCAGAATGTGAACCTAGTCCGTGCCCTGTTGGCCCGAGGGGCCAGTGCCTCCGCCAGA
GCTACAGGCTCCGCCTTCCATCGAAGTTCACACAACCTCATCTACTATGGAGAACACCCTTTGTCCTTTG
CTGCCTGTGTGGGTAGTGAGGAGATTGTTAGGTTGCTCATTGAGCATGGAGCTGACATCCGTGCCCAGGA
CTCCCTGGGAAATACAGTACTACACATACTTGTCCTGCAGCCCAACAAAACCTTTGCCTGTCAGATGTAC
AACCTGCTACTGTCCTATGATGGAGGAGACCACCTGAAGTCCCTGGAGCTTGTGCCCAACAACCAGGGAC
TCACCCCCTTCAAGTTGGCTGGGGTGGAAGGCAACACAGTGATGTTTCAACATCTAATGCAGAAACGGAA
GCGCATCCAGTGGTCCTTTGGGCCCCTAACATCTTCCCTCTATGACCTCACAGAGATTGACTCCTGGGGT
GAGGAGCTGTCCTTTCTGGAGCTTGTGGTTTCCTCCAAGAAGAAAGAGGCTCGACAGATTCTAGAACAGA
CCCCAGTGAAGGAGCTGGTGAGCCTGAAGTGGAAGAAATATGGACAGCCTTATTTCTGCCTCCTGGGTGC
TCTGTACATCTTCTACATGGTCTGCTTCACCACATGCTGTGTTTACCGCCCCCTCAAGTTCCGAGATGCC
AACCGTACACATGTTCGAGATAACACCATCATGGAACAGAAATCACTACAGGAAGCATATGTGACTTACC
AGGATAAGATCCGGCTGGTCGGGGAGTTGGTGACAGTCATTGGGGCTGTAATTATTCTACTCCTAGAGAT
CCCAGACATCTTCAGAGTTGGTGCCTCTCGCTACTTTGGACAAACAGTTCTTGGGGGCCCATTCCATGTC
ATCATCATTACATATGCCTCCCTTGTGCTACTGACTATGGCAATGAGGCTTACCAATGTGAATGGCGAGG
TAGTGCCCATGTCCATGGCCCTGGTGCTGGGCTGGTGTAGTGTCATGTACTTCGCCCGAGGATTCCAGAT
GCTGGGCCCCTTCACAATCATGATTCAGAAGATGATTTTTGGAGACCTACTGCGCTTCTGCTGGCTAATG
GCTATGGTCATCCTGGGATTTGCCTCAGCCTTCTATATCATTTTCCAGACAGAGGATCCAGATAATCTGG
GGGAATTCTCCGACTACCCCACAGCAATGTTCAGCACCTTTGAGCTGTTCCTCACCATCATTGACGGACC
TGCCAATTACAGAGTGGATCTGCCCTTCATGTACAGTGTTACCTATGCCACCTTTGCCATCATCGCCACA
CTGCTCATGCTCAACTTGTTCATTGCCATGATGGGCGACACTCACTGGCGAGTGGCCCAGGAGAGGGACG
AGCTCTGGAGAGCACAAGTTGTAGCCACCACAGTGATGCTGGAGAGGAAAATGCCTCGTTTCCTGTGGCC
TCGCTCTGGTATCTGTGGTTGCGAATACGGCCTGGGAGACCGTTGGTTCTTACGGGTTGAACACCACCAG
GAGCAGAATCCTTATCGAGTACTTCGATATGTGGAAGCTTTCAAATCTTCAGACAAAGAGGAAGTACAAG
AGCAGCTATCTGAGAAACAACCTTCTGGGACTGAGACTGGGACTTTAGCTAGAGGCTCTGTGGTTCTCCA
AACACCTCCTTTGTCCAGGACTACATCCCTAAGCAGCAATAGCCACCGTGGATGGGAAATTCTCCGTCGA
AACACCCTGGGACATTTGAATCTTGGACTAGACCCTGGTGAAGGGGATGGGGAAGAGATCTACCAGTTCT
GA

Translation (723 aa):
MGAKTPWIQLQKLLNWWVRDQDWNQHVDQLHMLQQKSIWESPLLRAAKENDMCTLKKLQHDQNCDFRQRG
ALGETALHVAALYDNLDAAIMLMEAAPYLVTESTLCEPFVGQTALHIAVMNQNVNLVRALLARGASASAR
ATGSAFHRSSHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILVLQPNKTFACQMY
NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNTVMFQHLMQKRKRIQWSFGPLTSSLYDLTEIDSWG
EELSFLELVVSSKKKEARQILEQTPVKELVSLKWKKYGQPYFCLLGALYIFYMVCFTTCCVYRPLKFRDA
NRTHVRDNTIMEQKSLQEAYVTYQDKIRLVGELVTVIGAVIILLLEIPDIFRVGASRYFGQTVLGGPFHV
IIITYASLVLLTMAMRLTNVNGEVVPMSMALVLGWCSVMYFARGFQMLGPFTIMIQKMIFGDLLRFCWLM
AMVILGFASAFYIIFQTEDPDNLGEFSDYPTAMFSTFELFLTIIDGPANYRVDLPFMYSVTYATFAIIAT
LLMLNLFIAMMGDTHWRVAQERDELWRAQVVATTVMLERKMPRFLWPRSGICGCEYGLGDRWFLRVEHHQ
EQNPYRVLRYVEAFKSSDKEEVQEQLSEKQPSGTETGTLARGSVVLQTPPLSRTTSLSSNSHRGWEILRR
NTLGHLNLGLDPGEGDGEEIYQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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