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Report for CCDS71503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71503.1 Public Mus musculus 4 Capzb 23 108 98 CCDS HistoryNCBI Gene:12345Re-query CCDS DB by CCDS ID:71503.1Re-query CCDS DB by GeneID:12345See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71503.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030518.15 ENSMUSP00000030518.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030518.15Link to Ensembl Protein Viewer:ENSMUSP00000030518.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000030518Re-query CCDS DB by Protein ID:ENSMUSP00000030518
Original member Current member NCBI NM_001271405.1 NP_001258334.1 Accepted alive Link to Nucleotide Sequence:NM_001271405.1Link to Protein Sequence:NP_001258334.1Re-query CCDS DB by Nucleotide ID:NM_001271405Re-query CCDS DB by Protein ID:NP_001258334Link to BLAST:NP_001258334.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258334.1 301 P47757-4 301 100% 0 0

Chromosomal Locations for CCDS 71503.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139194130 139194219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139238909 139238998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139257261 139257382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139261984 139262097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139279996 139280137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139280468 139280584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139287029 139287094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139287756 139287832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139291003 139291090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGCATCCTAGCAGGCGCAGCCTTCCTTTCCCCCTGAACTGTCAGCTTGTTAGAGTTGGGACTGCTGATT
ATGGAGGTGCCTCGGAGCAGAGCGATCAGCAGCTGGACTGCGCCTTGGACCTGATGAGGCGCCTGCCTCC
ACAGCAGATTGAGAAGAACCTCAGCGATCTGATCGACCTGGTCCCCAGTCTGTGTGAAGATCTCCTGTCA
TCTGTTGACCAGCCCCTGAAAATTGCCAGAGACAAGGTGGTGGGCAAGGATTACCTTTTGTGTGACTACA
ACAGAGACGGGGACTCCTATAGGTCACCGTGGAGTAACAAGTATGACCCTCCTTTGGAAGATGGGGCCAT
GCCATCTGCTCGGCTCAGAAAGCTGGAGGTAGAGGCCAACAATGCCTTCGACCAATACCGAGACCTGTAT
TTTGAAGGTGGGGTCTCATCAGTCTACCTCTGGGATCTTGATCATGGCTTTGCTGGAGTGATCCTCATAA
AGAAAGCTGGAGATGGATCCAAGAAGATCAAAGGCTGCTGGGATTCCATCCACGTGGTGGAAGTGCAGGA
GAAGTCCAGCGGCCGTACTGCCCATTACAAGTTGACCTCCACGGTGATGCTATGGCTGCAAACCAACAAA
TCCGGCTCGGGCACCATGAACCTGGGAGGCAGCCTAACCAGACAGATGGAGAAAGACGAAACTGTGAGTG
ACTGTTCCCCACACATAGCCAACATCGGGCGCCTGGTGGAGGACATGGAAAACAAAATCCGAAGCACGCT
GAATGAGATCTACTTTGGAAAAACAAAGGACATCGTCAACGGGCTGAGGTCTGTGCAGACGTTTGCAGAC
AAATCAAAGCAAGAAGCGCTTAAGAACGACCTGGTGGAGGCCTTGAAGAGAAAGCAGCAGTGTTGA

Translation (301 aa):
MHPSRRSLPFPLNCQLVRVGTADYGGASEQSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLS
SVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLY
FEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNK
SGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRSVQTFAD
KSKQEALKNDLVEALKRKQQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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