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Report for CCDS51130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51130.1 Public Mus musculus 4 Faxc 23 108 98 CCDS HistoryNCBI Gene:76132Re-query CCDS DB by CCDS ID:51130.1Re-query CCDS DB by GeneID:76132See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51130.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029908.7 ENSMUSP00000029908.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029908.7Link to Ensembl Protein Viewer:ENSMUSP00000029908.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029908Re-query CCDS DB by Protein ID:ENSMUSP00000029908
Original member Current member NCBI NM_175234.4 NP_780443.2 Accepted alive Link to Nucleotide Sequence:NM_175234.4Link to Protein Sequence:NP_780443.2Re-query CCDS DB by Nucleotide ID:NM_175234Re-query CCDS DB by Protein ID:NP_780443Link to BLAST:NP_780443.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780443.2 409 Q3UMF9 409 100% 0 0

Chromosomal Locations for CCDS 51130.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 21931564 21931829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21936633 21936768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21948692 21948888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21958444 21958667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21982386 21982502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21993298 21993587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGCACTGGGGGGTTGGCTTTGCCTCGTCCAGGCCGTGCGTGGTGGACCTGAGCTGGAACCAGAGCATCT
CCTTCTTCGGCTGGTGGGCCGGGTCCGAGGAGCCCTTCTCCTTTTATGGGGACATCATCGCTTTCCCTTT
GCAGGATTACGGTGGGATCATGGCAGGGCTGGGCTCGGATCCCTGGTGGAAGAAAACCCTTTATTTGACC
GGGGGAGCTTTGCTGGCCGCGGCTGCGTATCTGCTCCACGAACTCCTGGTCATTAGGAAACAGCAAGAGC
TCGACTCCAAAGATGCTATTATTTTGCATCAGTTTGCAAGACCTAACAATGGTGTCCCCAGCTTGTCTCC
TTTCTGTTTGAAAATGGAAACTTACTTAAGAATGGCTGACCTACCCTATCAGAACTATTTTGGTGGAAAA
CTCTCTGCTCAAGGGAAGATGCCTTGGATTGAATATAATAATGAAAAAGTGTCTGGCACAGAATTCATAA
TCGACTTTCTGGAAGAGAAACTTGGAGTGAACTTAAATAAAAGCCTCGGCCCCCATGAAAGAGCCGTCTC
AAGAGCCGTGACCAAGATGGTGGAAGAGCACTTCTACTGGACGTTAGCTTATTGCCAGTGGGTGGACAAT
CTCAATGAGACCCGGAAGATGCTGTCACTTAGTGGCGGCGGTCCCTTCAGTAACCTGCTCAGGTGGGTCG
TGTGCCACATAACAAAAGGAATTGTGAAGCGGGAGATGCACGGCCACGGCATTGGCCGCTTCTCGGAGGA
AGAGATTTACATGCTGATGGAGAAGGACATGCGGTCTTTAGCAGGGCTTTTGGGTGACAAGAAGTACATC
ATGGGACCCAAGCTTTCCACTCTTGATGCCACTGTCTTTGGACACTTGGCACAGGCGATGTGGACCTTAC
CAGGGACAAGACCGGAGCGGCTAATCAAAGGCGAGCTGATCAACCTGGCCATGTACTGCGAGAGGATCAG
GAGGAAATTCTGGCCCGAGTGGCACCACGATGATGACAACACCATTTATGAGTCTGAGGAGAGCAGCGAG
GGCAGCAAGACTCACACACCCATGCTGGATTTTAGCTTTTACTCCAGGACAGAGACCTTTGAGGACGAGG
GGGCTGAGAACAGTTTCTCCAGGACCCCAGACACGGATTTCACCGGACACTCTCTCTTTGACTCCGATGT
GGAGATGGATGACTACACAGACCACGAACAGTGCAAGTGA

Translation (409 aa):
MHWGVGFASSRPCVVDLSWNQSISFFGWWAGSEEPFSFYGDIIAFPLQDYGGIMAGLGSDPWWKKTLYLT
GGALLAAAAYLLHELLVIRKQQELDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGK
LSAQGKMPWIEYNNEKVSGTEFIIDFLEEKLGVNLNKSLGPHERAVSRAVTKMVEEHFYWTLAYCQWVDN
LNETRKMLSLSGGGPFSNLLRWVVCHITKGIVKREMHGHGIGRFSEEEIYMLMEKDMRSLAGLLGDKKYI
MGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKFWPEWHHDDDNTIYESEESSE
GSKTHTPMLDFSFYSRTETFEDEGAENSFSRTPDTDFTGHSLFDSDVEMDDYTDHEQCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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