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Report for CCDS15752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15752.1 Public Mus musculus 2 Cimip2a 23 108 98 CCDS HistoryNCBI Gene:68222Re-query CCDS DB by CCDS ID:15752.1Re-query CCDS DB by GeneID:68222See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15752.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028346.3 ENSMUSP00000028346.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028346.3Link to Ensembl Protein Viewer:ENSMUSP00000028346.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028346Re-query CCDS DB by Protein ID:ENSMUSP00000028346
Original member NCBI NM_026624.3 NP_080900.1 Updated not alive Link to Nucleotide Sequence:NM_026624.3Link to Protein Sequence:NP_080900.1Re-query CCDS DB by Nucleotide ID:NM_026624Re-query CCDS DB by Protein ID:NP_080900
Current member NCBI NM_026624.4 NP_080900.1 Accepted alive Link to Nucleotide Sequence:NM_026624.4Link to Protein Sequence:NP_080900.1Re-query CCDS DB by Nucleotide ID:NM_026624Re-query CCDS DB by Protein ID:NP_080900Link to BLAST:NP_080900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080900.1 319 Q9D4K5 319 100% 0 0

Chromosomal Locations for CCDS 15752.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25218801 25218856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25220134 25220348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25220453 25220712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25220802 25220928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25221319 25221413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25221664 25221781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25222083 25222171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGACAGCTACACAGAAACACAACCTCTTCACTCCAGAACCCCACTACATCCCTGGTTATGCTGGTTTCT
ATCCTCAACTGCGCTACCAGGTGGGAAACACCTATGGCCGCACCACTGCACAGTTGCTCACAGATCCCAG
CGTACAGAAGAGCCCCTGCTCTGTTCTGTCACCTATGACCAAGCCCAAGTTCATTGAGGACTTCAGCAAA
TCCAAGCCACCATGGATTCCCTGCAGGGACCTGAGAGAGCCTTACATCCCCCACTATACCAGTCTGAAAC
CCTACAAGAATTTTGAGATCCTAGGCCAGCTCCCACGCCAGGATGTGGACACCCAGGGGCCGCCACAAGT
AGAGAACAGACAGGGACCACTGACTGCAGGCTTCATGCCTTATCCACCCTACCCGGCATGCCCCCCAGGC
AGAAAGGGGGAAGCTAGAGACCTGGGCCATCCAGGTCTACTGCTGGCATATGGGGAAGAGGCTTGGAAGG
ATGCAGCACCTCTTCAGGATACCCCAGGGAAGAACAACCAGCTATACCACTGCAGGAGGGATGAGTACCT
GCCTCCACACCCCCCACAGGAGACACTAGATGTAGGCAGATTCCAACGACTGCCCCAGCTAGACCACCCC
AACCTAATCCAACGCAAGGCCATCTCAGGTTATGCCGGCTTCGTCCCCCGGTTTGCCTGGGTAATGGGGA
TGAATTACCGTGATGGTGTCACACAAGCTATGGATGACTTTGACAAGAACCAGTTCGTGTTCAGACACCC
AGTCTGTGCCCTGGGTGAAAGGCTGCCTAGGACCCACTGGCCAAACACCACCATCTATAGAAGCCAAGGC
CTGATTCCTTTCTACATGGGCTTTATCCCATCCATGCAGGACAACTATGCACTGACATTCGGTAACAGCA
CCCGAAGAGCCTATCAGAAGGAATTGGACAGGCGAAGCCACACACTATGA

Translation (319 aa):
MTATQKHNLFTPEPHYIPGYAGFYPQLRYQVGNTYGRTTAQLLTDPSVQKSPCSVLSPMTKPKFIEDFSK
SKPPWIPCRDLREPYIPHYTSLKPYKNFEILGQLPRQDVDTQGPPQVENRQGPLTAGFMPYPPYPACPPG
RKGEARDLGHPGLLLAYGEEAWKDAAPLQDTPGKNNQLYHCRRDEYLPPHPPQETLDVGRFQRLPQLDHP
NLIQRKAISGYAGFVPRFAWVMGMNYRDGVTQAMDDFDKNQFVFRHPVCALGERLPRTHWPNTTIYRSQG
LIPFYMGFIPSMQDNYALTFGNSTRRAYQKELDRRSHTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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