NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15186.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15186.1 Public Mus musculus 1 Pask 23 108 98 CCDS HistoryNCBI Gene:269224Re-query CCDS DB by CCDS ID:15186.1Re-query CCDS DB by GeneID:269224See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15186.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027493.3 ENSMUSP00000027493.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027493.3Link to Ensembl Protein Viewer:ENSMUSP00000027493.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000027493Re-query CCDS DB by Protein ID:ENSMUSP00000027493
Original member NCBI NM_080850.2 NP_543126.2 Updated not alive Link to Nucleotide Sequence:NM_080850.2Link to Protein Sequence:NP_543126.2Re-query CCDS DB by Nucleotide ID:NM_080850Re-query CCDS DB by Protein ID:NP_543126
Current member NCBI NM_080850.3 NP_543126.2 Accepted alive Link to Nucleotide Sequence:NM_080850.3Link to Protein Sequence:NP_543126.2Re-query CCDS DB by Nucleotide ID:NM_080850Re-query CCDS DB by Protein ID:NP_543126Link to BLAST:NP_543126.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543126.2 1383 Q8CEE6 1383 100% 0 0

Chromosomal Locations for CCDS 15186.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93310092 93310249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93310768 93310914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93312796 93312929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93314281 93314480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93316785 93316919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93317021 93317146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93319960 93320127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93320494 93320675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93320775 93322222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93324202 93324355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93325364 93325532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93327216 93327476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93330755 93330889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93331559 93331699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93334543 93334713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93335610 93335845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93337345 93337531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4152 nt):
ATGGAGGACAGAGGTCCACCAGTTTTTGCTGAGGACTGGAAATGTTTGTCTGAGAGTCCTCCTGTCCAAG
AAGGCCCAGCGGCCCAGGCTACCTTTGAGCCCAGCAAGCCACTCTCCATAGCCCACAAACACCTGAGCAG
GAAGAATGGGCTTTCTAGACTCTGCCAGAGCCGAATGGCGCTCTCTGAGGACAGGTGGAGCTCTTACTGT
CTTTCATCATTGGCTGCCCAAAACATCTGCACAAGCAAACTGCACTGCGCTGCTGCACCTGAGTATGCTG
ACCCTACAGCTGGGCCACTGGGCAGTACTTCCTGCTGCTCCTTGCTGCGTGGCCTGGCTTCAGGATGCTC
TGGGTCCCTGCTTTCGACCCCTGTGTGCAACCCCAACAAGGCTGTCTTTACCGTGGATGCCAAGACCACA
GAGATTCTGGTTGCCAACGACAAAGCCTGCAGCCTCCTAGGGTATAGCAGTCATGACCTGATTGGCCAAA
AGCTCGCCCAATTCTTCCTCAAATCTGATTCCGAGGTGGTGGAAGCCCTCAGCGAGGAACATGTGGAGGC
TGATGGCCACGCTGCAGTGGTGTTCGGCACAGTGGTGGACATCGTCAGCCGAATTGGGGAGAAGATTCCA
GTCTCTGTGTGGATAAAGAGATTGCAGCAAGATCGTGGCTTGTGCTGTGTAGTGGTTCTGGAGCCTGTGG
AGAGAGTGTCAGCCTGGGTCGCCTTCCAGAGTGATGGAACTATCACATCATGCGACAGTCTCTTTGCTCA
TCTCCATGGGTTCACATCTCCAAAGGATGTAGTTGGGCAGTGTGTCATAGACTTGATTCCATCCATGCAG
CTCCCTCCTCCTGGCCAACATATCCCAAAGAGTCTCAAGATTCAAAGGTCTGTTGGGAGAGCCAGAGACG
GCACCACCTTCCCTCTCAGTTTGAAGCTGAAATCCAAGCCCAGTGGAAGGGCTGTAGCTGACAGTGAGGC
GGCCTCTGAACCAGGTTACCAGGCTTCTGTGTGGGTGTTCTGCACCATCAGTGGCCTCATCACTCTGCTG
CCAGATGGCACAATTTATGGAGTCAACCACAGCTTTGCACTAATGCTGTTTGGTTATGGAAAGACAGAGC
TCCTGGGCAAGAATATCACTTTCCTGATTCCTGGTTTCTACCACTACATGGACCTCACATATGATAGTTC
GGTACAGCTGCCAGATCTGGTCAATTGCCTCGACATTGGCAGAAAGAGTGGGCCTGGGGAGATGAACTCT
GATGCCCAACACAACTGGGAACTGGCCAGTGGGGCCCAGGGTCCAAGAATTGACGTGGTGTTGGCACGGG
ACCACATGCCATCACAAGATGAGACCCTGAAGCTGGTGGGAGGACAAGTCTCCTCTAGGACTCAGACACG
ATTGGAAACTGGATACAAGATACTTCCTTCTTCTGCATGTCAGCCCTCACTGGGGGTGGACAGCAACCCA
GAGGATGGTGAGCAGTCATTGCTCACAGACCAGCAAAGCATTCCAAAGAGAAACCTGCCAGCCCATGGTG
GTCAGAACCAGCTAGACACCTCAGAAATATCCCTACCAGTCCTTAAAGAACATTTATTGTCTGAAATTCA
GAAAAATATCTCAGAAGAAAGCCCACTAACCCACAGGAAATGGTTATCCAAGGTGCAACAAAACCCCACA
AAAGGAAGCCTGCCCATCCACGAGGAGCAGCTATTGTTTGCAGGCCAGCATATCCATGTCTTGGGAAAGG
AGGATCCTTCAGCAGCAGAGAGCTACAGGGAGAGTCTTTTAGAAGAAAGCAAGTCCAAACCAGTGGATGC
AAAACTGTTTGCTTCATGTGAAGATTCTGAGCCTCTAGTTTCAGTTAAGGACAGGGGCAGCAGTGTGGAC
ACGTGTAATCTGCATCAGGAAGCTCAGTTGGAGCTGATGGGTGTCAGCAGTCCTAACCCCTGGGCTGATG
CCACCATGCCTGAGCCCCACACCACAGGGCAGATAGCAGGCGGGAGCCTTACATATTGCCCACAGTACAG
AAGCGAGTGGGCCTCACAGCAGCGAGGCCAGGACTCGGCTCCCAGCCCCTCTGGAATGGCGTGTGTCTTG
CTTGGGACACCCACTCTGGATGAACCATGGCCAGGAGTGAGAAATGACAGAGAAGAGCTGCAGACTTGCT
TGATTAAGGAACAGTTATCCAAGTCAAGCTGTGAGGGAAATCTGGGCATCTCCCGTGTGGAACTCGTTCC
TGAAGAACATCCTCCTTTCACCGCCCCCGTGTCTTTCTGTGATCTGGGAGGCCGAGATCTACACGCTAGC
CGCTCAGGCAGCTCCTCAGCCTGCTATGCTTTGGCCACCGACCTCCCTGGTGTCCTGGAGGCAGTGGAAG
CTCAGGAGGCTGATGTGAATTCTTATTCCTGGAACCTCAAGGAGCTCTTTCTCAAGGACCAGACAGACAG
AACTCCATCACATTGTTCCTGTACCACATCTGAACTCAGCGAGGCGCCATCTCTTTCAGTGGTGGGGTCA
GATTTAGATGTGGGTATTCTGCATAGGCAGACTTCAGATATTTTAGTTGACCGAGAGATGTTGCTCCTTA
CTGGGACCTATTTTGACCTTAGTGAAGGCCAACGGTTCCAGGAGATGGGAGCAGGACATGATCGAGCAGA
ACTGTCTAACATTTCTTTGGTATCCTCTGAACACTATGAAACTAGTGACATAGAAAGCCCAGGTTGTGAC
CCTCCCTTACCAGATCCTGGTCCCAACGATATGTGCCTATCAGCAGAGAAGCCCAGGCCGAGTGCCCAGA
TCACTTCCACTCCTGTGGCACGTGGGGCCACCAGCCTGCAGCAGGAGATCCAAGAGGGCATCTACTCTGG
AAGCTGCTACCACCGGGATGGCTTACAACTGAGTATACAGTTTGAAGTCAAGCGTGTGGAGCTCCAGGGC
TCTGCGACCCTGTTCTGCTGCTGGCTGGTGAAGGACCTCTTCCATAGCCACCGGGACTCAGCCACACGAA
CCCGCCTGTTCCTTGCCAGTCTGCCTAGCTCTACCCACTCCATGCCTGAGCTGTCTGGATCCAGCTTTGG
AGAGGTGCTCAGAGCCAAGCCTTGGTTTGAGGAATCCCCAACACCTGCAGAGCTAGAGGGGCTGGCGGCC
TGTGAGGGCGAGTACGACTATAAGTATAACACCATCAGCCCACTTGGCAGTGGGGCCTTTGGCTTTGTGT
GGACTGCAGTGGAGAAGGAATGCAACAAAGAGGTGGTGGTGAAGTTTATTAAGAAGGAGAAGGTTTTAGA
GGATTGCTGGATTGAGGATCCCAAACTTGGAAGAGTTACTTTAGAGATTGCAATTCTGTCCAAGGTGGAC
CATGCCAACATAATCAAGGTTCTGGATATATTCGAAAACCAAGAGTTCTTCCAGCTGGTGATGGAAAAGC
ACGGCTCTGGCATGGACCTCTTTGCTTTCATTGACCACCATCCCTGCTTGGATGAGCCCCTGGCGAGTTT
CATCTTTCGACAACTAGTGTCTGCTGTAGGATACCTGCACTCCCAAGGCATCATCCATAGAGACATCAAG
GATGAGAACATTGTGATTGCTGAGGACTTCACAATTAAGCTGATAGATTTTGGCTCAGCTGCCTACTTAG
AGAGGGGCAAACTATTTTATACCTTTTGTGGAACAATCGAATACTGTGCACCTGAGGTTCTCATTGGAAA
TCCCTACAGAGGGCCAGAGCTGGAGATGTGGTCTCTGGGGGTCACCCTGTACACGCTCATCTTCGAGGAG
AATCCCTTCTGTGAGGTGGAGGAGACCATGGAGGCAGTTATTCATCCCCCATTCCTGGTTTCCCAAGAAC
TTATGAGTCTTCTGTCTGGACTGCTGCAGCCTTGCCCTGAGCAGCGGACCACTTTGGAGAAGCTGATCAG
GGACCCCTGGGTGACACAGCCTGTGAACCTTGCTAGCTATACTTGGGAAGAGGTGTGTAGGACCAACCAG
CCAGAAAGTGGCCTGCTGTCAGCTGCAAGTCTGGAGATTGGGAGTAGGAGTCCAAGTGAAATGGCTCAGA
GAGAGGGTCTCTGTGGGCCTCCTGCTCCCAGGGAGACTCGTGGTGACCAGCACTGCTTGCATCTTAAGGA
CCCCTCTTTGCCAGTCAGCTGA

Translation (1383 aa):
MEDRGPPVFAEDWKCLSESPPVQEGPAAQATFEPSKPLSIAHKHLSRKNGLSRLCQSRMALSEDRWSSYC
LSSLAAQNICTSKLHCAAAPEYADPTAGPLGSTSCCSLLRGLASGCSGSLLSTPVCNPNKAVFTVDAKTT
EILVANDKACSLLGYSSHDLIGQKLAQFFLKSDSEVVEALSEEHVEADGHAAVVFGTVVDIVSRIGEKIP
VSVWIKRLQQDRGLCCVVVLEPVERVSAWVAFQSDGTITSCDSLFAHLHGFTSPKDVVGQCVIDLIPSMQ
LPPPGQHIPKSLKIQRSVGRARDGTTFPLSLKLKSKPSGRAVADSEAASEPGYQASVWVFCTISGLITLL
PDGTIYGVNHSFALMLFGYGKTELLGKNITFLIPGFYHYMDLTYDSSVQLPDLVNCLDIGRKSGPGEMNS
DAQHNWELASGAQGPRIDVVLARDHMPSQDETLKLVGGQVSSRTQTRLETGYKILPSSACQPSLGVDSNP
EDGEQSLLTDQQSIPKRNLPAHGGQNQLDTSEISLPVLKEHLLSEIQKNISEESPLTHRKWLSKVQQNPT
KGSLPIHEEQLLFAGQHIHVLGKEDPSAAESYRESLLEESKSKPVDAKLFASCEDSEPLVSVKDRGSSVD
TCNLHQEAQLELMGVSSPNPWADATMPEPHTTGQIAGGSLTYCPQYRSEWASQQRGQDSAPSPSGMACVL
LGTPTLDEPWPGVRNDREELQTCLIKEQLSKSSCEGNLGISRVELVPEEHPPFTAPVSFCDLGGRDLHAS
RSGSSSACYALATDLPGVLEAVEAQEADVNSYSWNLKELFLKDQTDRTPSHCSCTTSELSEAPSLSVVGS
DLDVGILHRQTSDILVDREMLLLTGTYFDLSEGQRFQEMGAGHDRAELSNISLVSSEHYETSDIESPGCD
PPLPDPGPNDMCLSAEKPRPSAQITSTPVARGATSLQQEIQEGIYSGSCYHRDGLQLSIQFEVKRVELQG
SATLFCCWLVKDLFHSHRDSATRTRLFLASLPSSTHSMPELSGSSFGEVLRAKPWFEESPTPAELEGLAA
CEGEYDYKYNTISPLGSGAFGFVWTAVEKECNKEVVVKFIKKEKVLEDCWIEDPKLGRVTLEIAILSKVD
HANIIKVLDIFENQEFFQLVMEKHGSGMDLFAFIDHHPCLDEPLASFIFRQLVSAVGYLHSQGIIHRDIK
DENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLIGNPYRGPELEMWSLGVTLYTLIFEE
NPFCEVEETMEAVIHPPFLVSQELMSLLSGLLQPCPEQRTTLEKLIRDPWVTQPVNLASYTWEEVCRTNQ
PESGLLSAASLEIGSRSPSEMAQREGLCGPPAPRETRGDQHCLHLKDPSLPVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH