NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35671.1 Public Mus musculus 1 Mterf4 23 108 98 CCDS HistoryNCBI Gene:69821Re-query CCDS DB by CCDS ID:35671.1Re-query CCDS DB by GeneID:69821See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35671.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027492.13 ENSMUSP00000027492.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027492.13Link to Ensembl Protein Viewer:ENSMUSP00000027492.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027492Re-query CCDS DB by Protein ID:ENSMUSP00000027492
Original member Current member NCBI NM_178051.4 NP_835152.1 Accepted alive Link to Nucleotide Sequence:NM_178051.4Link to Protein Sequence:NP_835152.1Re-query CCDS DB by Nucleotide ID:NM_178051Re-query CCDS DB by Protein ID:NP_835152Link to BLAST:NP_835152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835152.1 346 Q8BVN4 346 100% 0 0

Chromosomal Locations for CCDS 35671.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93301460 93301795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93302718 93302902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93304608 93305106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93305825 93305845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGCTTCGCTGGGAAGGCAGGTTCCTGAGTGGCATCGTCTACTGGCCCTCTCCTGGGCCTGTTTGGTTA
GGCAGACCCCTCATCTCAGAGAACAGAAACAGATGAGCCCTTCTTTGTCTTGCAAACTGACTACAGTGCC
CGGTAGAGGAAGCTTTCAAGAGTTTTCCAGCATTACACCCCAAAAGTACATGCAGGAACCAGAAAACAGG
ACACGACTTGTTCAGTGTCTTCATGAGGAACAGAAGCCTTGTGTGGATCCTGAGTCCTTGGAGCCTGAAA
AGGTCATCCGTTCCCTCCAGGACATGGGTTTTGCTGAAGCCCACATTCACAGCTTGTTTAGTATACAGCC
AAGTGTCCATCCTCAACAGTTGCTGGGTATAGTTTCAGAACTCCTACTCTTGGGGTTGAACCCAGAGCCT
GTATTTAATGCCTTGAAGAAAAATCCCCAGTTGCTGAAACTGTCTAGCATGCAGATGAAGAGGCGTTCCA
GTTACCTTCGGAAGCTTGGCCTTGGAGAAGGGAAACTGAAGCGGGTGCTGTCCGTTTGCCCTGAGGTTTT
CACCATGCATCAGCGGGACATTGACCGAGTTGTGAAGGTCCTCAGGGAGAAGTGCTTGTTCACGGCACAG
CACATCACAGACGTTCTGCACAGATGCCCCACTGTTTTGCAGGAGGACCCCAACGAGCTAGAATACAAAT
TCCAGTATGCATATTTCAGGATGGGACTCACACATCTAGACATAGTCAGGACGAATTTCTTACAGTATTC
AATAACCAAGATCAAGCAGAGACACATTTACCTGGAGCGCCTTGGACGGTACCAGACCCCTGATAAGAAG
GGGCAGACACAGATCCCTAATCCCTCACTGAGGAACATTCTCAGAGTTTCTGAAGCTGAGTTTTTGGCCA
GGACAGCCTGTTCCTCTGTCGAGGAGTTTCAAGTTTTTAAAAAACTCTTGGATCAAGAGGAGGAGGAGGA
GTCTGAGAGCCATGCATCTGAGGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGCTACTGTGA

Translation (346 aa):
MASLGRQVPEWHRLLALSWACLVRQTPHLREQKQMSPSLSCKLTTVPGRGSFQEFSSITPQKYMQEPENR
TRLVQCLHEEQKPCVDPESLEPEKVIRSLQDMGFAEAHIHSLFSIQPSVHPQQLLGIVSELLLLGLNPEP
VFNALKKNPQLLKLSSMQMKRRSSYLRKLGLGEGKLKRVLSVCPEVFTMHQRDIDRVVKVLREKCLFTAQ
HITDVLHRCPTVLQEDPNELEYKFQYAYFRMGLTHLDIVRTNFLQYSITKIKQRHIYLERLGRYQTPDKK
GQTQIPNPSLRNILRVSEAEFLARTACSSVEEFQVFKKLLDQEEEEESESHASEEEEEEEEEEELL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH