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Report for CCDS38007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38007.1 Public Mus musculus 19 Fbxl15 23 108 98 CCDS HistoryNCBI Gene:68431Re-query CCDS DB by CCDS ID:38007.1Re-query CCDS DB by GeneID:68431See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38007.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026256.8 ENSMUSP00000026256.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026256.8Link to Ensembl Protein Viewer:ENSMUSP00000026256.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000026256Re-query CCDS DB by Protein ID:ENSMUSP00000026256
Original member Current member EBI ENSMUST00000177667.1 ENSMUSP00000137489.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177667.1Link to Ensembl Protein Viewer:ENSMUSP00000137489.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177667Re-query CCDS DB by Protein ID:ENSMUSP00000137489
Original member Current member NCBI NM_133694.2 NP_598455.2 Accepted alive Link to Nucleotide Sequence:NM_133694.2Link to Protein Sequence:NP_598455.2Re-query CCDS DB by Nucleotide ID:NM_133694Re-query CCDS DB by Protein ID:NP_598455Link to BLAST:NP_598455.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598455.2 300 Q91W61 300 100% 0 0

Chromosomal Locations for CCDS 38007.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46328474 46328526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46328675 46328828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46329088 46329593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46330102 46330291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGAGCCACCAATGGAGCAGTCCGGAGGGGAGCAAGAACCAGGAGCTGTCAGGCTCCTGGACCTGCCCT
GGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGT
CAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAGGTG
GGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGC
TGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCG
GAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCG
CGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACC
GCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCT
GGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCG
GTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAA
GCGACGGTGTCAGGACACTGGCCGAGTACTGCCCGGCGCTGCGCTCTCTGCGGGTGCGGCACTGCCACCA
TGTGGCTGAACCGAGCCTGAGCCGCTTGCGGAAGCGTGGTGTGGACATCGACGTGGAACCACCCCTGCAC
CAGGCTCTGGTGCTACTCCAGGACATGGCAGGCTTCGCACCCTTTGTCAACCTACAGGTCTGA

Translation (300 aa):
MEPPMEQSGGEQEPGAVRLLDLPWEDVLLPHVLNWVPLRQLLRLQRVSRAFRALVQLHLARLRRFDAAQV
GPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVALAGCGQLSRRALGALAEGCP
RLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLKDEAIVYLAQRRGAGLRSLSLAVNANVGDTA
VQELARNCPQLEHLDLTGCLRVGSDGVRTLAEYCPALRSLRVRHCHHVAEPSLSRLRKRGVDIDVEPPLH
QALVLLQDMAGFAPFVNLQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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