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Report for CCDS84324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84324.1 Public Mus musculus 17 St6gal2 23 108 98 CCDS HistoryNCBI Gene:240119Re-query CCDS DB by CCDS ID:84324.1Re-query CCDS DB by GeneID:240119See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84324.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025000.3 ENSMUSP00000025000.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025000.3Link to Ensembl Protein Viewer:ENSMUSP00000025000.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025000Re-query CCDS DB by Protein ID:ENSMUSP00000025000
Original member Current member NCBI NM_001347403.1 NP_001334332.1 Accepted alive Link to Nucleotide Sequence:NM_001347403.1Link to Protein Sequence:NP_001334332.1Re-query CCDS DB by Nucleotide ID:NM_001347403Re-query CCDS DB by Protein ID:NP_001334332Link to BLAST:NP_001334332.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334332.1 524 Q76K27-1 524 100% 0 0

Chromosomal Locations for CCDS 84324.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 55481967 55482894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55490943 55491040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55496292 55496393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55498232 55498406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55510141 55510412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGAAACCACACTTGAAGCAATGGCGACAACGAATGCTCTTTGGAATATTTGTTTGGGGGCTCCTCTTTT
TGGCAATTTTCATCTACTTCACCAACAGCAATCCTGCGGCACCTATGCCCAGCTCCTTTTCCTTCCTGGA
GAGACGTGGGCTCCTGCCTCTACAGGGCAAGCAGCGGGTCATCATGGGCGCTTTGCAGGAACCCTCTTTG
CCCAGAAGTTTGGATGCAAGCAAAGTGCTGCTGGACAGCCACCCTGAGAACCCTTTCCACCCTTGGCCTG
GGGACCCACAGAAATGGGATCAGGCCCCAAATGGCTTTGACAATGGGGATGAGTTTTTTACATCCCAGGT
TGGGAGGAAATCACAAAGCGCTTTCTATCCCGAGGAAGATAGCTATTTTTTTGTTGCGGATCAGCCTGAG
TTGTACCACCACAGGCAGGGTGCACTGGAGCTGCCATCTCCAGGGGAGACATCATGGCGATCAGGACCTG
TTCAGCCCAAGCAGAAGCTGCTCCACCCAAGGCGAGGCAGCTTGCCTGAGGAAGCCTATGACAGCGACAT
GCTGTCAGCCTCCATGTCGAGAGCCTTCCTGTACCGGCTCTGGAAGGGGGCCGTGTCCTCTAAGATGTTG
AACCCGCGCCTGCAGAAGGCCATGCGTTACTACATGTCCTTCAACAAGCATGGTGTGCGCTTCCGCAGGC
GGGGTCGGCGTGAAGCTACACGTACAGGGCCGGAGCTGCTGTGTGAGATGCGCAGACGTGTGCGTGTGCG
CACGTTGGACGGCAGAGAGGCGCCCTTCTCGGGGCTGGGCTGGCGGCCTCTGGTACCAGGTGTACCTCTG
AGCCAGTTGCACCCGCGCGGTCTGAGCAGCTGCGCAGTTGTCATGTCTGCCGGTGCCATCCTGAACTCCT
CCTTGGGGGAGGAAATCGATTCTCATGATGCAGTTTTGAGATTTAACTCTGCCCCTACACGTGGCTATGA
GAAAGATGTCGGAAATAAAACCACAGTACGCATCATTAATTCTCAGATTCTGGCCAACCCCAGCCATCAC
TTCATTGACAGTGCTTTATATAAAGATGTTATCCTGGTAGCCTGGGATCCTGCTCCTTATTCTGCCAATC
TTAACCTGTGGTATAAGAAGCCAGATTACAACCTTTTCACTCCATATATCCAGCATCGCCGGAAATACCC
GACTCAGCCATTTTACATTCTTCACCCCAAGTTCATATGGCAGCTTTGGGACATTATCCAGGAGAATACA
AGGGAGAAGATACAGCCCAACCCACCATCTTCTGGTTTTATTGGAATCCTCATCATGATGTCCATGTGTA
AAGAGGTGCACGTGTATGAGTACATCCCATCTGTTCGACAGACAGAGCTTTGCCACTACCATGAGCTGTA
CTACGACGCAGCCTGCACCTTGGGGGCCTACCACCCACTGCTCTATGAAAAGCTACTGGTGCAGCGCCTT
AACACTGGCACCCAGGCAGACTTGCATCACAAGGGCAAGGTAGTCTTGCCAGGCTTCCAGACCCTTCGGT
GTCCAGTAACCAGCCCCAACAATACACACTCTTAA

Translation (524 aa):
MKPHLKQWRQRMLFGIFVWGLLFLAIFIYFTNSNPAAPMPSSFSFLERRGLLPLQGKQRVIMGALQEPSL
PRSLDASKVLLDSHPENPFHPWPGDPQKWDQAPNGFDNGDEFFTSQVGRKSQSAFYPEEDSYFFVADQPE
LYHHRQGALELPSPGETSWRSGPVQPKQKLLHPRRGSLPEEAYDSDMLSASMSRAFLYRLWKGAVSSKML
NPRLQKAMRYYMSFNKHGVRFRRRGRREATRTGPELLCEMRRRVRVRTLDGREAPFSGLGWRPLVPGVPL
SQLHPRGLSSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTVRIINSQILANPSHH
FIDSALYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYIQHRRKYPTQPFYILHPKFIWQLWDIIQENT
REKIQPNPPSSGFIGILIMMSMCKEVHVYEYIPSVRQTELCHYHELYYDAACTLGAYHPLLYEKLLVQRL
NTGTQADLHHKGKVVLPGFQTLRCPVTSPNNTHS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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