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Report for CCDS27568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27568.1 Public Mus musculus 15 Maf1 23 108 98 CCDS HistoryNCBI Gene:68877Re-query CCDS DB by CCDS ID:27568.1Re-query CCDS DB by GeneID:68877See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27568.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023212.14 ENSMUSP00000023212.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023212.14Link to Ensembl Protein Viewer:ENSMUSP00000023212.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023212Re-query CCDS DB by Protein ID:ENSMUSP00000023212
Original member Current member EBI ENSMUST00000160853.7 ENSMUSP00000124893.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160853.7Link to Ensembl Protein Viewer:ENSMUSP00000124893.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160853Re-query CCDS DB by Protein ID:ENSMUSP00000124893
Original member Current member EBI ENSMUST00000161527.7 ENSMUSP00000125387.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161527.7Link to Ensembl Protein Viewer:ENSMUSP00000125387.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161527Re-query CCDS DB by Protein ID:ENSMUSP00000125387
Original member Current member NCBI NM_001164607.1 NP_001158079.1 Accepted alive Link to Nucleotide Sequence:NM_001164607.1Link to Protein Sequence:NP_001158079.1Re-query CCDS DB by Nucleotide ID:NM_001164607Re-query CCDS DB by Protein ID:NP_001158079Link to BLAST:NP_001158079.1
Original member Current member NCBI NM_001164608.1 NP_001158080.1 Accepted alive Link to Nucleotide Sequence:NM_001164608.1Link to Protein Sequence:NP_001158080.1Re-query CCDS DB by Nucleotide ID:NM_001164608Re-query CCDS DB by Protein ID:NP_001158080Link to BLAST:NP_001158080.1
Original member Current member NCBI NM_026859.3 NP_081135.3 Accepted alive Link to Nucleotide Sequence:NM_026859.3Link to Protein Sequence:NP_081135.3Re-query CCDS DB by Nucleotide ID:NM_026859Re-query CCDS DB by Protein ID:NP_081135Link to BLAST:NP_081135.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158079.1 258 Q9D0U6 258 100% 0 0
NP_001158080.1 258 Q9D0U6 258 100% 0 0
NP_081135.3 258 Q9D0U6 258 100% 0 0

Chromosomal Locations for CCDS 27568.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76352470 76352552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76352646 76352774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76352847 76353012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76353138 76353259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76353341 76353460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76353586 76353720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76353847 76353868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGAAGCTATTGGAGAACTCCAGCTTTGAGGCCATCAACTCACAGTTGACAGTGGAGACTGGAGATGCCC
ATATTATTGGCAGGATTGAAAGCTACTCGTGTAAGATGGCGGGAGATGATAAACATATGTTCAAGCAGTT
CTGCCAGGAGGGCCAGCCCCATGTGTTGGAGGCACTGTCCCCACCCCAAACTTCAGGCCTCAGTCCCAGC
AGACTGAGCAAGAGCCAGGGTGGTGAGGATGAGAGTCCTCTGAGCGACAAGTGCAGCCGCAAGACCCTCT
TCTATCTGATTGCCACCCTCAATGAGTCCTTCCGGCCAGACTATGACTTCAGCACAGCCAGAAGTCATGA
ATTCAGCCGAGAGCCAAGCCTCCGCTGGGTGGTAAATGCAGTCAACTGCAGCCTGTTTTCAGCTGTTCGT
GAAGACTTCAAGGCCCTGAAGCCACAGCTGTGGAATGCAGTGGATGAGGAGATCTGCTTAGCTGAGTGTG
ACATCTACAGCTATAACCCAGATCTAGACTCCGACCCCTTTGGGGAAGATGGAAGCCTCTGGTCATTCAA
CTATTTCTTTTACAATAAGAGACTGAAGCGAATTGTCTTCTTTAGCTGCCGCTCCATCAGTGGCTCCACG
TACACACCCTCAGAGGCAGGCAATGCACTGGACTTGGAACTGGGGGCAGAGGAGGCTGATGAAGAGAGTG
GAGGTGGAGGCGGTGAGGGCAGGGCAGAGGAGACCAGCACCATGGAGGAAGACAGGGTTCCAGTGATCTG
TATGTGA

Translation (258 aa):
MKLLENSSFEAINSQLTVETGDAHIIGRIESYSCKMAGDDKHMFKQFCQEGQPHVLEALSPPQTSGLSPS
RLSKSQGGEDESPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSHEFSREPSLRWVVNAVNCSLFSAVR
EDFKALKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVFFSCRSISGST
YTPSEAGNALDLELGAEEADEESGGGGGEGRAEETSTMEEDRVPVICM


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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