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Report for CCDS28087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28087.1 Public Mus musculus 16 Cldn1 23 108 98 CCDS HistoryNCBI Gene:12737Re-query CCDS DB by CCDS ID:28087.1Re-query CCDS DB by GeneID:12737See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023154.2 ENSMUSP00000023154.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023154.2Link to Ensembl Protein Viewer:ENSMUSP00000023154.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000023154Re-query CCDS DB by Protein ID:ENSMUSP00000023154
Original member Current member NCBI NM_016674.4 NP_057883.1 Accepted alive Link to Nucleotide Sequence:NM_016674.4Link to Protein Sequence:NP_057883.1Re-query CCDS DB by Nucleotide ID:NM_016674Re-query CCDS DB by Protein ID:NP_057883Link to BLAST:NP_057883.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057883.1 211 O88551 211 100% 0 0

Chromosomal Locations for CCDS 28087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 26359038 26359200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26360843 26360927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26363070 26363234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26371404 26371626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGCCAACGCGGGGCTGCAGCTGCTGGGTTTCATCCTGGCTTCTCTGGGATGGATCGGCTCCATCGTCA
GCACTGCCCTGCCCCAGTGGAAGATTTACTCCTATGCTGGGGACAACATCGTGACCGCTCAGGCCATCTA
CGAGGGACTGTGGATGTCCTGCGTTTCGCAAAGCACCGGGCAGATACAGTGCAAAGTCTTCGACTCCTTG
CTGAATCTGAACAGTACTTTGCAGGCAACCCGAGCCTTGATGGTAATTGGCATCCTGCTGGGGCTGATCG
CAATCTTTGTGTCCACCATTGGCATGAAGTGCATGAGGTGCCTGGAAGATGATGAGGTGCAGAAGATGTG
GATGGCTGTCATTGGGGGCATAATATTTTTAATTTCAGGTCTGGCGACATTAGTGGCCACAGCATGGTAT
GGAAACAGAATTGTTCAAGAATTCTATGACCCCTTGACCCCCATCAATGCCAGGTATGAATTTGGCCAGG
CCCTCTTTACTGGCTGGGCCGCTGCCTCCCTCTGCCTTCTGGGAGGTGTCCTACTTTCCTGCTCCTGTCC
CCGGAAAACAACCTCTTACCCAACACCACGGCCTTATCCCAAGCCAACACCTTCTAGTGGGAAAGACTAT
GTGTGA

Translation (211 aa):
MANAGLQLLGFILASLGWIGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQCKVFDSL
LNLNSTLQATRALMVIGILLGLIAIFVSTIGMKCMRCLEDDEVQKMWMAVIGGIIFLISGLATLVATAWY
GNRIVQEFYDPLTPINARYEFGQALFTGWAAASLCLLGGVLLSCSCPRKTTSYPTPRPYPKPTPSSGKDY
V


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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