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Report for CCDS27672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27672.1 Public Mus musculus 15 Tef 23 108 98 CCDS HistoryNCBI Gene:21685Re-query CCDS DB by CCDS ID:27672.1Re-query CCDS DB by GeneID:21685See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023024.7 ENSMUSP00000023024.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023024.7Link to Ensembl Protein Viewer:ENSMUSP00000023024.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023024Re-query CCDS DB by Protein ID:ENSMUSP00000023024
Original member Current member NCBI NM_017376.3 NP_059072.1 Accepted alive Link to Nucleotide Sequence:NM_017376.3Link to Protein Sequence:NP_059072.1Re-query CCDS DB by Nucleotide ID:NM_017376Re-query CCDS DB by Protein ID:NP_059072Link to BLAST:NP_059072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059072.1 301 Q9JLC6-1 301 100% 0 0

Chromosomal Locations for CCDS 27672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81811570 81811720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81814944 81815261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81821199 81821419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81823466 81823681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGTCCGACGCGGGCGGCGGGAAGAAGCCGCCTGTGGAGCCTCAGGCGGGGCCGGGCCCGGGGCGTGCAG
CTGGAGAACGGGGCCTGTCGGGCTCCTTCCCTCTGGTCCTGAAGAAGCTGATGGAGAACCCCCCGCGCGA
GACGCGCCTCGATAAGGAAAAGGGGAAGGAAAAGCTGGAGGAAGACGAGTCAGCAGCAGCCAGTACCATG
GCCGTCTCTGCCTCCCTCATGCCACCCATCTGGGACAAGACCATCCCCTACGATGGCGAGTCCTTCCACC
TCGAGTACATGGACCTGGATGAGTTCCTGCTGGAGAACGGCATCCCTGCCAGCCCCACCCACCTGGCACA
GAACCTGCTGCTGCCTGTGGCAGAGCTTGAAGGAAAGGAGTCTGCCAGCTCTTCCACGGCATCGCCACCA
TCTTCCTCTACTGCCATCTTTCAGCCCTCGGAAACCGTGTCCAGCACAGAATCGTCCTTGGAAAAGGAGA
GGGAGACCCCAAGTCCCATCGACCCCAGCTGTGTGGAGGTCGATGTGAACTTCAACCCTGACCCTGCCGA
CCTGGTCCTCTCTAGTGTACCAGGGGGGGAGCTCTTCAACCCTCGGAAGCACAGGTTTGCAGAGGAGGAC
CTGAAGCCCCAGCCCATGATCAAAAAAGCCAAGAAAGTCTTTGTCCCTGATGAACAGAAGGATGAAAAGT
ATTGGACAAGACGTAAGAAGAACAATGTGGCAGCTAAACGCTCCCGGGATGCCAGGCGCCTGAAGGAGAA
CCAGATCACCATCCGGGCAGCGTTCCTGGAGAAGGAGAACACAGCCCTGCGGACGGAGGTTGCCGAGCTT
CGCAAGGAGGTGGGCAAGTGCAAGACCATCGTGTCCAAGTACGAGACCAAGTACGGGCCCTTGTAA

Translation (301 aa):
MSDAGGGKKPPVEPQAGPGPGRAAGERGLSGSFPLVLKKLMENPPRETRLDKEKGKEKLEEDESAAASTM
AVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAQNLLLPVAELEGKESASSSTASPP
SSSTAIFQPSETVSSTESSLEKERETPSPIDPSCVEVDVNFNPDPADLVLSSVPGGELFNPRKHRFAEED
LKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAEL
RKEVGKCKTIVSKYETKYGPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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