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Report for CCDS26847.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26847.2 Public Mus musculus 14 Usp54 23 108 98 CCDS HistoryNCBI Gene:78787Re-query CCDS DB by CCDS ID:26847.2Re-query CCDS DB by GeneID:78787See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26847.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022356.11 ENSMUSP00000022356.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022356.11Link to Ensembl Protein Viewer:ENSMUSP00000022356.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000022356Re-query CCDS DB by Protein ID:ENSMUSP00000022356
Original member Current member EBI ENSMUST00000035340.13 ENSMUSP00000036214.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035340.13Link to Ensembl Protein Viewer:ENSMUSP00000036214.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035340Re-query CCDS DB by Protein ID:ENSMUSP00000036214
Original member NCBI NM_030180.2 NP_084456.2 Updated not alive Link to Nucleotide Sequence:NM_030180.2Link to Protein Sequence:NP_084456.2Re-query CCDS DB by Nucleotide ID:NM_030180Re-query CCDS DB by Protein ID:NP_084456
Current member NCBI NM_030180.3 NP_084456.2 Accepted alive Link to Nucleotide Sequence:NM_030180.3Link to Protein Sequence:NP_084456.2Re-query CCDS DB by Nucleotide ID:NM_030180Re-query CCDS DB by Protein ID:NP_084456Link to BLAST:NP_084456.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084456.2 1588 Q8BL06-1 1588 100% 0 0

Chromosomal Locations for CCDS 26847.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20549901 20550460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20552074 20552260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20556247 20556365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20560846 20562242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20564868 20565063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20565943 20566062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20570248 20570415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20573768 20573901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20576473 20576704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20576935 20577312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20577455 20577586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20583322 20583490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20586000 20586149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20588075 20588221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20588333 20588438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20589184 20589266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20589374 20589487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20591479 20591613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20604052 20604144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20607082 20607228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4767 nt):
ATGTCTTGGAAAAGAAATTACTTTTCTGGAAGCCGAGGTAGTGTTCAAGGGATGTTCGCACCTCGGAGCT
CAATGTCCATTGCCCCCAGCAAAGGCCTCAGCAATGAGCCAGGGCAAAACAGCTGCTTCCTCAACAGTGC
CCTGCAGGTTTTGTGGCACTTGGACATCTTCCGCCGTAGCTTTCGGCAGCTTACAACTCACAAGTGCATG
GGTGATTCCTGCATCTTCTGTGCTCTCAAGGGCATCTTTAACCAGTTTCAGTGTAGTAGTGAAAAAGTGC
TTCCTTCCGACACTCTCCGCAGTGCTCTGGCAAAGACTTTCCAAGATGAACAACGCTTCCAGCTGGGGAT
TATGGATGATGCTGCAGAATGCTTTGAAAACCTCCTGATGAGAATTCACTTCCATATTGCTGATGAAACC
AAAGAGGATATATGTACTGCTCAACACTGCATATCCCACCAGAAATTTGCAATGACATTGTTTGAGCAGT
GTGTGTGCAGCAGCTGTGGCGCCACGTCCGACCCGCTGCCCTTTATCCAGATGGTGCACTACATCTCCAC
CACTGCCCTCTGTAACCAGGCTATTTGTATGCTGGAAAAGCGAGAGAAACCCTCACCAAGTATGTTTGGT
GAGCTGCTTCAGAATGCCAGCACCATGGGGGACCTGCGGAACTGTCCGAGCAACTGTGGGGAGAGAATCC
GGATCCGCCGTGTCTTGATGAATGCACCACAGATTATCACGATTGGTCTGGTTTGGGACTCAGAGCATTC
AGACTTGGCAGAGGACGTCATCCACAGCCTGGGCACCTGCCTTAAGCTGGGTGATCTGTTTTTCAGAGTG
ACAGATGACCGGGCCAAGCAGTCTGAACTATACTTAGTAGGAATGATCTGTTACTATGGCAAGCATTATT
CTACATTCTTTTTTCAAACAAAGATCCGCAAATGGATGTATTTTGATGATGCTCATGTCAAGGAGATTGG
TCCGAAGTGGAAGGATGTGGTCACCAAATGCATTAAAGGGCACTATCAACCCTTGCTGCTGCTCTATGCA
GACCCCCAGGGTACTCCAGTGTCTGCCCAGGACCTGCCTCCCCACGCTCAGTTCCTGCCATACACCAAGA
CATGCTACGATAGTGAAGACTCAGGACACCTGACTGATAGTGAATGTAATCAGAAACACACATCGAAGAA
AGGGTCCCTGGTGGAGCGCAGGAGGAGCAGTGGCCGTGTTCGGAGAAAAGGCGATGAGCCACAGGCCTCA
GGGTACCACAGCGAAGGAGAAACACTGAAAGAGAAGCAGGCTCCTAGGAATGCCTCTAAATCCAGCAGCA
GCAGCAGGCTAAAGGATTTCAAAGAGACAGTCAGCAACATGATCCACAGCAGGCCTTCCCTGGCTTCTCA
GACCAGTGCAGGATCTCCCTGTGTAGGTAGGGCAGGAGACCAGCTAGACAAGATACCACCAAGGAACTTC
CCTTTACAGGCTCGGGGCTGGGAAACGGAGAGTACCAGTAGTGAGGCAAAATCCAGTTCTTCCAGCAAGT
ACCGCCCAACATGGAGACCTAAACGAGAATCTCTAAATATTGACAGCATTTTTAGTAAGGACAGAAGGAA
GCATTGTGGCTACACCCAGCTTAGGACCTTTCCTGAAGATGCAGCTAAAGAATTTACACCGGATGAAGTA
AGCAAGCCAACTGCTAATGACATTAAAGATGGCGGATCAAGGTCACAGCATAAACTCTGGGGAACAGCTC
GGCCAGGCTCTCATCTTTTAGAGCAGCATCCTCGCCTAATCCAGCGGATGGAATCTGGCTATGAGAGCAG
TGAGAGGAACAGCAGCAGCCCTGTCAGTTTGGATGCTGCCCCGCCTGACAGCGTGAATGTCTACAGGGAT
CAAAGCACAAAGAGGCCTGTTGGGTTTGTCCCTTCTTGGCGTCATATTCCAAAGTCTCACAGCAGTAGCA
TCCTGGAGGTAGACTGTACAGCACCCATGACCAGCTGGACAAAGACTCAACCTCTCTCAGATGGGGAGGT
CACCTCTAGAAGTGAATTGGATGAACTACAGGAAGAAGTGGTCAGGCGAGCCCAGGAACAGGAGCTGCGG
AAGAAACGGGAGAAGGAATTAGAGGCTGCTAAAGGCTTTAACCCTCATCCCAGCCGCTACATGGATTTGG
ATGAACTGCAGAATCAGGGGAGGAGTGACGGCTTTGAAAGGTCCTTGCAAGAGGCAAATTCAATATTTGA
AGAGTCGCTGCATCTGGAACAAAAGGGAGACTGTGCTGCAGCTCTGGCTCTGTGTAACGAAGCTATCTCT
AAACTAAGACTTACCCTGCATGATGCCAGCTCTAGCACGCACAGCAGAGCCCTAGTCGATAAGAAGTTGC
AAATCAGTATTCGAAAAGCACGAAGCCTTCAGGATCGCATGCAGCAACAAGCATCATCGCAGCAGCCGGT
GCAGCCCTCAGCCTCTCTCCCATCACAGGGGGGCGCCCTCCCTCAGCCGACAAGTGAACAGCCTATCACG
CTCCAAGTATTGTTAAACCAGGAGGCACAGCTGGAACCTTGCAAGGATACAGAGCTTGGGGCCACTTCCT
CTTTCTTCCACTCACCTGCTTCCTGCCCTGAGTTACACTCATCACTCATCCCAGAGTCACCTGTTTCATC
TGTTTCACAGCACAGTCCCCCTGGGACATCTTCCTTGAAGCTTCTGACGTCTTTTGAGGTGGACAGCGTC
AATCGCTCTGCATTCCACAGGCAGGGTTTACCTAAAGCAACAGGTAGAACTGAGATGAACTCTCAACATG
AATGCCTGCCATTAGATGCCCTTGAAGATAGGCTCCAAGGCCACAGGGAGGACAACAGCTGTTGCAGCAA
ATTCCCACCACGAGAAGGAAGAGACATAGCTCAAGATCAGCTGTTTGAAGGAAAAAAGAATCCTGCTGAT
ATATCCATGGGGATGCCTTGGTCATATTCAACAGGAGAAGCCACTTCTGAGAGAGTTATATATAGCCTAA
ATAGTCCTTCAAGTTCATCAGCTCAGCCTAGTATTCCCCCTTACAGTTCCTGCCACCCCATCACGTCTGC
TGCTTCTTCACCTGTGCTTCATGCTGCTGACCCCATGCAGAAACTTAACCAACACGTTCAAGCCCAAAGT
CTCCAGACTTCATTGACTTCAAAAGTGGTCAGAAGCAGTGAGGAGCCCTATAGGCTAGAGTTCCCCAGTA
CAAAAGGACTTGTCCGCTCATTGGCAGAGCAATTCCAGAAGATGCAGAATACTTCCACGAGAGATGTTAT
AGGTTCCCAGGATAGAAGTTTGCCAAATGGTGTCAGGAAGAGCTCTTCTCCTTCTGACTTTATGCCTCCA
TTATCCCAGGGTCCAGGAAGAGAGCACTGTCGCTGGGTAAAACAACCCCGTTCCCCCGATGGCAGGGAAA
GACCGCCCTGCTGGGAAGACCCTGCAGCTCATCCTCCTCTTTCCATGGGCTCGGGGCTTCCTGATGGTGA
AACCTCGAGGACAGCACAGCCCAGGCTGGCTGAGCCAGATATGTACCAAGGAAAGCTACCCCAAGTGACA
GATATTAGGTCCAAGGAGCTGGGTAGTAGTGTCAATTTGGGGACTTCTTTGCCTTTGGATTCTTGGGTAA
ATGTCACAAGGCTCTGTGATTCTCAGGTTAAACCCAGTGCCCCTGGGCCCGGAGACAAGTCCTCCTCCCA
TGATTCCCACCCACGTGCAACCTGCCTAGAAAGAAGTCCTATCCTTTTGCATCCACACTGGGACCAAGAC
ACAGAGCAGGAGACCTCTGAACTGGAGTCTCTCTACCAAGCCAGCCTTCAGGCCTCTTCTCACACTGCCT
ATTCTGATTGGAGATCACAGGATGTGGCCTGGCAGCCACTTAGCCTAGCAGGCTCTGCAGATGGCATGGG
AAGGAGACTGCACTCAGCCCCTGGGCTTGATCTCTCAAAGCCTCTGACAGCAGAGATGGAGCATGTCCTT
TATGAACCGAGCACAGTGCCTGTCTCTCAGGATTCATCAAACGTGAGGAAAAAGACTTTGGAAACCGGGC
ACCATTGTTCCAGCTCCTCTTCCCTCCCTGTCATCCATGATCCTCCTGTATTTCTCCTTGATCCTAAACT
CTACCCTCCCCAACCACAGTTCCTGTCCCCAGATGTCCTGATGCCCAGCATGGCAGGGGAGCCCTATAGA
CCCCCAGGAACTTCAAGGAGTGTCCACCAGTTTCTGGCTATGTGTGACAGGGATGAAACTCCCCAAGGGG
TCAAGTACACAGGAAGGACTTTGAACTACCGAAGTCTACCTCATCGTTCCAGAACTGATGCTTCCTGGGG
ACCAGGGTCAGAGACCAACCAGCACATTGGGGCCAGAGTCCTAACTATGCCAGCATGCAAGCCTCAGCTA
ACCTACACTGCCACACTACCAGAAAGACACCAGGGCCTTCAGGTTCCACATGCTCAGTCCTGGGGGAATC
TTTTCCACTCACCCTCCCATCCTTCTGCTGTTCACCCAGGGTCCCCACCATCCAGCAATCTTCATGTACC
CCTTAGGTCAACTTGGAATTCTGGTCCTGTTCTGGGGTCCCGAACACCTGGTCCACGAAGAATAGACATG
CCCCCAGATGATGACTGGAGACAGAGCAGTTACCCCTCCCAGGACAGACACAGGAGCCCAGGAGAGGAAA
GAATTATGTTTGCTCTATCAAATGCTGCTGGAAGAGAGCAGAACAGGGTGAGATTTCTACAGCACAGCAG
GTGGTAA

Translation (1588 aa):
MSWKRNYFSGSRGSVQGMFAPRSSMSIAPSKGLSNEPGQNSCFLNSALQVLWHLDIFRRSFRQLTTHKCM
GDSCIFCALKGIFNQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIADET
KEDICTAQHCISHQKFAMTLFEQCVCSSCGATSDPLPFIQMVHYISTTALCNQAICMLEKREKPSPSMFG
ELLQNASTMGDLRNCPSNCGERIRIRRVLMNAPQIITIGLVWDSEHSDLAEDVIHSLGTCLKLGDLFFRV
TDDRAKQSELYLVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLYA
DPQGTPVSAQDLPPHAQFLPYTKTCYDSEDSGHLTDSECNQKHTSKKGSLVERRRSSGRVRRKGDEPQAS
GYHSEGETLKEKQAPRNASKSSSSSRLKDFKETVSNMIHSRPSLASQTSAGSPCVGRAGDQLDKIPPRNF
PLQARGWETESTSSEAKSSSSSKYRPTWRPKRESLNIDSIFSKDRRKHCGYTQLRTFPEDAAKEFTPDEV
SKPTANDIKDGGSRSQHKLWGTARPGSHLLEQHPRLIQRMESGYESSERNSSSPVSLDAAPPDSVNVYRD
QSTKRPVGFVPSWRHIPKSHSSSILEVDCTAPMTSWTKTQPLSDGEVTSRSELDELQEEVVRRAQEQELR
KKREKELEAAKGFNPHPSRYMDLDELQNQGRSDGFERSLQEANSIFEESLHLEQKGDCAAALALCNEAIS
KLRLTLHDASSSTHSRALVDKKLQISIRKARSLQDRMQQQASSQQPVQPSASLPSQGGALPQPTSEQPIT
LQVLLNQEAQLEPCKDTELGATSSFFHSPASCPELHSSLIPESPVSSVSQHSPPGTSSLKLLTSFEVDSV
NRSAFHRQGLPKATGRTEMNSQHECLPLDALEDRLQGHREDNSCCSKFPPREGRDIAQDQLFEGKKNPAD
ISMGMPWSYSTGEATSERVIYSLNSPSSSSAQPSIPPYSSCHPITSAASSPVLHAADPMQKLNQHVQAQS
LQTSLTSKVVRSSEEPYRLEFPSTKGLVRSLAEQFQKMQNTSTRDVIGSQDRSLPNGVRKSSSPSDFMPP
LSQGPGREHCRWVKQPRSPDGRERPPCWEDPAAHPPLSMGSGLPDGETSRTAQPRLAEPDMYQGKLPQVT
DIRSKELGSSVNLGTSLPLDSWVNVTRLCDSQVKPSAPGPGDKSSSHDSHPRATCLERSPILLHPHWDQD
TEQETSELESLYQASLQASSHTAYSDWRSQDVAWQPLSLAGSADGMGRRLHSAPGLDLSKPLTAEMEHVL
YEPSTVPVSQDSSNVRKKTLETGHHCSSSSSLPVIHDPPVFLLDPKLYPPQPQFLSPDVLMPSMAGEPYR
PPGTSRSVHQFLAMCDRDETPQGVKYTGRTLNYRSLPHRSRTDASWGPGSETNQHIGARVLTMPACKPQL
TYTATLPERHQGLQVPHAQSWGNLFHSPSHPSAVHPGSPPSSNLHVPLRSTWNSGPVLGSRTPGPRRIDM
PPDDDWRQSSYPSQDRHRSPGEERIMFALSNAAGREQNRVRFLQHSRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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