NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26671.1 Public Mus musculus 13 Hapln1 23 108 98 CCDS HistoryNCBI Gene:12950Re-query CCDS DB by CCDS ID:26671.1Re-query CCDS DB by GeneID:12950See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26671.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022108.8 ENSMUSP00000022108.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022108.8Link to Ensembl Protein Viewer:ENSMUSP00000022108.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022108Re-query CCDS DB by Protein ID:ENSMUSP00000022108
Original member Current member NCBI NM_013500.4 NP_038528.3 Accepted alive Link to Nucleotide Sequence:NM_013500.4Link to Protein Sequence:NP_038528.3Re-query CCDS DB by Nucleotide ID:NM_013500Re-query CCDS DB by Protein ID:NP_038528Link to BLAST:NP_038528.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038528.3 356 Q9QUP5 356 100% 0 0

Chromosomal Locations for CCDS 26671.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 89584722 89584827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89601444 89601815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89605195 89605497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89607860 89608149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGAGAAGTCTGCTTCTCCTGGTGCTGATTTCAGTCTGTTGGGCTGACCACCACCTTTCAGACAGCTACA
CTCCTCCAGATCAAGACAGAGTTATTCACATCCAAGCAGAAAATGGCCCCCGTCTACTTGTGGAAGCAGA
ACAAGCCAAGGTCTTCTCTCACCGAGGTGGCAACGTGACACTGCCATGCAAATTTTATCGAGACCCTACA
GCATTTGGCTCAGGAATCCACAAAATCCGCATCAAGTGGACCAAGCTAACTTCAGATTACCTCAGGGAAG
TAGATGTCTTCGTTTCCATGGGCTATCACAAGAAGACCTATGGAGGCTATCAAGGTCGAGTGTTTCTGAA
GGGAGGCAGTGATAATGATGCCTCCCTGGTCATCACGGATCTTACCCTGGAGGATTATGGGAGATATAAA
TGTGAGGTGATTGAAGGGCTAGAAGATGATACTGCTGTGGTGGCATTGGAGTTACAAGGTGTGGTGTTCC
CTTACTTTCCACGACTGGGACGCTACAATCTTAACTTTCACGAGGCACGCCAGGCTTGTCTGGACCAGGA
CGCAGTGATTGCTTCCTTTGACCAGCTGTACGATGCCTGGCGGGGTGGGCTGGACTGGTGCAATGCTGGC
TGGCTCAGTGATGGATCTGTGCAGTACCCAATCACCAAACCACGAGAGCCCTGCGGGGGCCAAAACACGG
TGCCTGGAGTCAGGAACTACGGGTTTTGGGACAAGGATAAAAGCAGATATGACGTTTTCTGTTTTACATC
CAACTTCAACGGCCGATTTTACTACCTGATCCACCCCACCAAACTCACCTACGATGAGGCGGTGCAAGCT
TGTCTCAATGACGGTGCTCAGATCGCGAAAGTGGGCCAGATATTTGCTGCCTGGAAGCTTCTGGGCTATG
ACCGCTGCGATGCCGGCTGGCTAGCGGATGGCAGCGTCCGCTATCCTATTTCTCGACCAAGAAGGCGCTG
CAGTCCGACTGAGGCTGCAGTGCGCTTTGTAGGTTTCCCAGATAAAAAGCATAAGCTATACGGGGTCTAT
TGCTTCAGAGCATACAACTGA

Translation (356 aa):
MRSLLLLVLISVCWADHHLSDSYTPPDQDRVIHIQAENGPRLLVEAEQAKVFSHRGGNVTLPCKFYRDPT
AFGSGIHKIRIKWTKLTSDYLREVDVFVSMGYHKKTYGGYQGRVFLKGGSDNDASLVITDLTLEDYGRYK
CEVIEGLEDDTAVVALELQGVVFPYFPRLGRYNLNFHEARQACLDQDAVIASFDQLYDAWRGGLDWCNAG
WLSDGSVQYPITKPREPCGGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQA
CLNDGAQIAKVGQIFAAWKLLGYDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVY
CFRAYN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH