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Report for CCDS26074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26074.1 Public Mus musculus 12 Vipas39 23 108 98 CCDS HistoryNCBI Gene:104799Re-query CCDS DB by CCDS ID:26074.1Re-query CCDS DB by GeneID:104799See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26074.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021426.9 ENSMUSP00000021426.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021426.9Link to Ensembl Protein Viewer:ENSMUSP00000021426.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000021426Re-query CCDS DB by Protein ID:ENSMUSP00000021426
Original member Current member EBI ENSMUST00000179379.8 ENSMUSP00000137190.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179379.8Link to Ensembl Protein Viewer:ENSMUSP00000137190.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179379Re-query CCDS DB by Protein ID:ENSMUSP00000137190
Original member Current member NCBI NM_001142581.1 NP_001136053.1 Accepted alive Link to Nucleotide Sequence:NM_001142581.1Link to Protein Sequence:NP_001136053.1Re-query CCDS DB by Nucleotide ID:NM_001142581Re-query CCDS DB by Protein ID:NP_001136053Link to BLAST:NP_001136053.1
Original member Current member NCBI NM_134044.3 NP_598805.2 Accepted alive Link to Nucleotide Sequence:NM_134044.3Link to Protein Sequence:NP_598805.2Re-query CCDS DB by Nucleotide ID:NM_134044Re-query CCDS DB by Protein ID:NP_598805Link to BLAST:NP_598805.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136053.1 472 Q8BGQ1-2 472 100% 0 0
NP_598805.2 472 Q8BGQ1-2 472 100% 0 0

Chromosomal Locations for CCDS 26074.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 87239816 87239836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87241237 87241341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87241937 87242026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87242486 87242572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87244455 87244544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87244840 87244881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87246129 87246263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87246819 87246894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87249388 87249461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87250477 87250504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87251716 87251818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87252635 87252668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87253166 87253258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87256485 87256549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87257415 87257453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87259081 87259221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87260632 87260734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87263905 87263997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGAACCGGACAAAAGGTGATGAGGAGGAATATTGGAACAGCTCCAAGTTCAAGGCTTTCACTTTTGATG
ATGAAGATGATGAGCTCTCACAGTTAAAGGAATCCAAACGCGCAGTGAATAGCCTTCGAGACATCGTGGA
TGACGACGATGACGATGACCTGGAGAGAGTCAGCTGGACTGGAGAACCTGTGGGAAGTATCTCATGGTCC
ATCAAAGAGACTGCTGGGAGTAGCGGGTCAACCCCTGAGGGACGTGAACAGCTAAAGGGCCGAAACAGCT
TCTACACACAGCTACCCAAACCTCCTTCTACTTACTCCCTCAGCAGCTTCTTCAGAGGTAGAACTAGACC
TGGGAGTTTCCAGTCCCTTTCTGATGCTCTGTCAGACACACCTGCCAAAAGTTATGCTCCAGAGCTGGGG
AGGCCTAAGGGAGAATACAGGGTCTGTTCACTAGAGCGCTTCCGCTCCCTCCAGGATAAGCTGCAGCTCC
TAGAGGAGGCAGTAAGCATGCATGATGGGAACGTCATCACTGCAGTTCTGATCTTCCTGAAGAGGACCCT
GAGCAAAGAGATCCTTTTTCGAGAGCTGGAGGTACGCCAGGTCGCACTGAGACATCTCATTCATTTTCTT
AAAGAAATAGGGGACCAAAAGCTGCTTTTAGATCTCTTCAGGTTCCTAGATAGAGCAGAAGAACTGGCGC
TATCCCATTATCGAGAGCACTTGAACATTCAGGACCCTGAAAAACGAAAAGAATTTCTTAAGACTTGCAT
TGGTTTGCCATTTTCAGCAGAAGACGCTGCGCATGTACAAGACCATTACACCCTGCTGGAGCGCCAGATC
ATCATCGAGGCAAACGACCGGCACCTGGAGTCTTCAGGGCAGACTGATATCTTCCGGAAGCACCCCCGTA
AAGCTTCCATTCTCAACATGCCGTTAGTGACGACACTCTTCTACGCCTGCTTCTATCACTACACGGAGTC
TGAGGGAACCTTCAGCAGTCCCATCAACCTGAAGAAAACATTCAAGATCCCAGACAAACAGTATGTGCTG
ACAGCCTTGGCTGCGCGTGCCAAGCTGAGAGCCTGGAATGACGTTGATGCCCTGTTCACCACAAAGAACT
GGTTGGGTTACACCAAGAAGAGAGCACCCATTGGCTTCCATCGAGTTGTGGAAATTTTGCACAAGAACAG
TGCCCCTGTCCAGATACTGCAGGAATATGTCAATCTGGTGGAAGATGTGGACACCAAGTTGAACTTAGCT
ACTAAGTTCAAGTGCCATGATGTCGTCATTGATACTTGCCGAGACCTGAAGGATCGTCAGCAGTTGCTTG
CATACAGGAGCAAAGTAGACAAAGGATCCGCCGAGGAAGAGAAGATTGACGCCATTCTCAGCAGCTCGCA
AATTCGATGGAAGAACTAA

Translation (472 aa):
MNRTKGDEEEYWNSSKFKAFTFDDEDDELSQLKESKRAVNSLRDIVDDDDDDDLERVSWTGEPVGSISWS
IKETAGSSGSTPEGREQLKGRNSFYTQLPKPPSTYSLSSFFRGRTRPGSFQSLSDALSDTPAKSYAPELG
RPKGEYRVCSLERFRSLQDKLQLLEEAVSMHDGNVITAVLIFLKRTLSKEILFRELEVRQVALRHLIHFL
KEIGDQKLLLDLFRFLDRAEELALSHYREHLNIQDPEKRKEFLKTCIGLPFSAEDAAHVQDHYTLLERQI
IIEANDRHLESSGQTDIFRKHPRKASILNMPLVTTLFYACFYHYTESEGTFSSPINLKKTFKIPDKQYVL
TALAARAKLRAWNDVDALFTTKNWLGYTKKRAPIGFHRVVEILHKNSAPVQILQEYVNLVEDVDTKLNLA
TKFKCHDVVIDTCRDLKDRQQLLAYRSKVDKGSAEEEKIDAILSSSQIRWKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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