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Report for CCDS40503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40503.1 Public Mus musculus 8 Aprt 23 108 98 CCDS HistoryNCBI Gene:11821Re-query CCDS DB by CCDS ID:40503.1Re-query CCDS DB by GeneID:11821See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40503.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006764.8 ENSMUSP00000006764.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006764.8Link to Ensembl Protein Viewer:ENSMUSP00000006764.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006764Re-query CCDS DB by Protein ID:ENSMUSP00000006764
Original member Current member NCBI NM_009698.2 NP_033828.2 Accepted alive Link to Nucleotide Sequence:NM_009698.2Link to Protein Sequence:NP_033828.2Re-query CCDS DB by Nucleotide ID:NM_009698Re-query CCDS DB by Protein ID:NP_033828Link to BLAST:NP_033828.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033828.2 180 P08030 180 100% 0 0

Chromosomal Locations for CCDS 40503.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122574885 122575027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122575137 122575215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122575402 122575535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122576515 122576621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122576753 122576832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGTCGGAACCTGAGTTGAAACTGGTGGCGCGGCGCATCCGCAGCTTCCCCGACTTCCCAATCCCGGGCG
TGCTGTTCAGGGATATCTCGCCCCTCTTGAAAGACCCGGACTCCTTCCGAGCTTCCATCCGCCTCTTGGC
CAGTCACCTGAAGTCCACGCACAGCGGCAAGATCGACTACATCGCAGGTCTAGACTCCAGGGGCTTCCTG
TTTGGCCCTTCCCTAGCTCAGGAGCTGGGCGTGGGCTGTGTGCTCATCCGGAAACAGGGGAAGCTGCCGG
GCCCCACTGTGTCAGCCTCCTATTCTCTGGAGTATGGGAAGGCTGAGCTGGAAATCCAGAAAGATGCCTT
GGAACCCGGGCAGAGAGTGGTCATTGTGGATGACCTCCTGGCCACAGGAGGAACCATGTTTGCGGCCTGT
GACCTGCTGCACCAGCTCCGGGCTGAAGTGGTGGAGTGTGTGAGCCTGGTGGAGCTGACCTCGCTGAAGG
GCAGGGAGAGGCTAGGACCTATACCATTCTTCTCTCTCCTCCAGTATGACTGA

Translation (180 aa):
MSEPELKLVARRIRSFPDFPIPGVLFRDISPLLKDPDSFRASIRLLASHLKSTHSGKIDYIAGLDSRGFL
FGPSLAQELGVGCVLIRKQGKLPGPTVSASYSLEYGKAELEIQKDALEPGQRVVIVDDLLATGGTMFAAC
DLLHQLRAEVVECVSLVELTSLKGRERLGPIPFFSLLQYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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