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Report for CCDS21268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21268.1 Public Mus musculus 7 Kdelr1 23 108 98 CCDS HistoryNCBI Gene:68137Re-query CCDS DB by CCDS ID:21268.1Re-query CCDS DB by GeneID:68137See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002855.13 ENSMUSP00000002855.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002855.13Link to Ensembl Protein Viewer:ENSMUSP00000002855.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000002855Re-query CCDS DB by Protein ID:ENSMUSP00000002855
Original member Current member NCBI NM_133950.2 NP_598711.1 Accepted alive Link to Nucleotide Sequence:NM_133950.2Link to Protein Sequence:NP_598711.1Re-query CCDS DB by Nucleotide ID:NM_133950Re-query CCDS DB by Protein ID:NP_598711Link to BLAST:NP_598711.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598711.1 212 Q99JH8 212 100% 0 0

Chromosomal Locations for CCDS 21268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45873011 45873101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45873759 45873859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45874043 45874201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45881500 45881752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45882977 45883011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGAACCTCTTCCGATTCCTGGGAGACCTCTCCCACCTCCTAGCTATCATCTTGTTACTGCTCAAAATCT
GGAAGTCCCGATCGTGTGCGGGCATTTCAGGGAAGAGCCAAGTCCTGTTTGCTGTGGTGTTCACTGCCCG
ATATCTGGACCTGTTCACCAACTACATTTCACTCTACAACACCTGCATGAAGGTGGTCTACATAGCTTGT
TCCTTTACCACGGTGTGGATGATCTACAGCAAGTTCAAAGCTACTTATGATGGCAACCACGACACTTTCC
GGGTGGAGTTCCTCGTCGTTCCTACTGCTATTTTGGCTTTCCTGGTCAACCATGACTTCACCCCTCTGGA
GATCCTCTGGACCTTCTCCATCTACCTGGAGTCAGTGGCTATCTTGCCACAGTTGTTCATGGTGAGCAAG
ACGGGTGAGGCGGAGACCATCACCAGCCATTACCTGTTTGCACTGGGTGTCTACCGTACACTCTATCTCT
TCAATTGGATCTGGCGCTACCACTTCGAGGGCTTTTTTGACCTCATCGCCATCGTTGCTGGCCTGGTCCA
GACAGTCCTCTACTGCGATTTCTTCTACCTCTATATCACCAAAGTCCTGAAGGGGAAGAAGCTGAGCTTG
CCGGCATAA

Translation (212 aa):
MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIAC
SFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSK
TGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGKKLSL
PA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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