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Report for CCDS40343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40343.1 Public Mus musculus 8 Hmgb2 23 108 98 CCDS HistoryNCBI Gene:97165Re-query CCDS DB by CCDS ID:40343.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40343.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067925.7 ENSMUSP00000065940.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067925.7Link to Ensembl Protein Viewer:ENSMUSP00000065940.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000067925Re-query CCDS DB by Protein ID:ENSMUSP00000065940
Original member Current member NCBI NM_001363443.1 NP_001350372.1 Accepted alive Link to Nucleotide Sequence:NM_001363443.1Link to Protein Sequence:NP_001350372.1Re-query CCDS DB by Nucleotide ID:NM_001363443Re-query CCDS DB by Protein ID:NP_001350372Link to BLAST:NP_001350372.1
Original member Current member NCBI NM_001363444.1 NP_001350373.1 Accepted alive Link to Nucleotide Sequence:NM_001363444.1Link to Protein Sequence:NP_001350373.1Re-query CCDS DB by Nucleotide ID:NM_001363444Re-query CCDS DB by Protein ID:NP_001350373Link to BLAST:NP_001350373.1
Original member Current member NCBI NM_001363445.1 NP_001350374.1 Accepted alive Link to Nucleotide Sequence:NM_001363445.1Link to Protein Sequence:NP_001350374.1Re-query CCDS DB by Nucleotide ID:NM_001363445Re-query CCDS DB by Protein ID:NP_001350374Link to BLAST:NP_001350374.1
Original member Current member NCBI NM_008252.3 NP_032278.1 Accepted alive Link to Nucleotide Sequence:NM_008252.3Link to Protein Sequence:NP_032278.1Re-query CCDS DB by Nucleotide ID:NM_008252Re-query CCDS DB by Protein ID:NP_032278Link to BLAST:NP_032278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350372.1 210 P30681 210 100% 0 0
NP_001350373.1 210 P30681 210 100% 0 0
NP_001350374.1 210 P30681 210 100% 0 0
NP_032278.1 210 P30681 210 100% 0 0

Chromosomal Locations for CCDS 40343.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 57512599 57512748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57513062 57513207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57513290 57513464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57513966 57514127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGGCAAGGGTGACCCCAACAAGCCGCGGGGCAAAATGTCCTCGTACGCCTTCTTCGTGCAGACCTGCC
GCGAGGAGCACAAGAAGAAGCATCCCGACTCGTCGGTGAACTTCGCCGAGTTCTCCAAGAAATGCTCCGA
GAGATGGAAGACCATGTCTGCAAAGGAAAAGTCCAAGTTTGAAGATTTGGCCAAGAGCGACAAAGCTCGT
TATGACAGGGAGATGAAGAACTATGTTCCTCCCAAAGGGGATAAGAAAGGAAAGAAAAAAGACCCCAATG
CTCCGAAGAGACCACCGTCTGCCTTCTTCCTGTTTTGCTCTGAAAATCGCCCAAAGATCAAAATTGAACA
CCCAGGCCTGTCTATTGGAGATACTGCGAAGAAACTGGGTGAGATGTGGTCTGAGCAATCTGCCAAAGAT
AAACAACCGTATGAGCAGAAAGCAGCTAAACTAAAGGAGAAGTATGAAAAGGATATTGCTGCATACCGTG
CCAAGGGCAAAAGTGAAGCAGGAAAGAAGGGTCCTGGTAGGCCAACAGGCTCAAAGAAGAAGAACGAACC
AGAAGATGAGGAGGAGGAAGAAGAGGAGGAAGAGGAGGAAGATGACGAGGAAGAAGAGGAGGATGAAGAA
TAA

Translation (210 aa):
MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKAR
YDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKD
KQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEEEEDDEEEEEDEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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